Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g622 ATGACGGTTTCTTCTGGTGAAAATTCTGCTGATAGCAAATGTTCACTATCTGGACTTGCTCCTCTTGAAGCGGTGCTGTTTGATATTGATGGAACTCTATGTGATTCAGATCCTCTGCACTACTATGCCTTCCGAGAATTGCTTCTGCAGATAGGCTATAATGGTGGAGTTCCAATAACGGAGGAATTCTTCATTGAGAATATTGCTGGCAAACATGGTGATGATGTCGCTAGGGGCATCTTCCCTGACTGGGACCTCGAGAAGGGCTTAAAATTCATGGATGATAAGGAAGCTTTGTTTCGAAAATTTGCGAAAGAACAAGTGAAGCCTTTAGATGGCCTACACAAGATAAGGAAATGGATTGAAGATCGAGGCTTGAAACGGGCTGCAGTTACTAATGCTCCAAGACCAAATGCTGAACTCATGATCTCACTTCTCGGCCTCTCTGATTTCTTCCAGGCAGTTGTTATTGGCAGCGAATGTGATCGTGCCAAACCATTCCCAGACCCCTACTTGAAGGCTCTTGAAGTCCTCCAAGTGTCAAAGGATAGCACATTCATCTTCGAGGATTCTGCTTCCGGGATTAAGGCTGGGGTGGCTGCTGGAATGCCTGTTGTTGGTTTAACTACCAGGAATCCTGAAAGCTTGTTGATGGAAGCAAAACCCGTCTTTCTCATACGTGATTATGATGATCCCAAATTGTGGGCGGCTTTGGCAGAGCTTGATCAGAAGGGAGCTCCAGGAGCAGCAGCTACTGCTTAA 762 45.67 MTVSSGENSADSKCSLSGLAPLEAVLFDIDGTLCDSDPLHYYAFRELLLQIGYNGGVPITEEFFIENIAGKHGDDVARGIFPDWDLEKGLKFMDDKEALFRKFAKEQVKPLDGLHKIRKWIEDRGLKRAAVTNAPRPNAELMISLLGLSDFFQAVVIGSECDRAKPFPDPYLKALEVLQVSKDSTFIFEDSASGIKAGVAAGMPVVGLTTRNPESLLMEAKPVFLIRDYDDPKLWAALAELDQKGAPGAAATA* 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6657870 6661876 - Vvi2g622 Vvi2g622 783321

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g622 253 CDD HAD_BPGM-like 24 210 - -
Vvi2g622 253 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 97 207 IPR006439 -
Vvi2g622 253 Gene3D - 23 231 IPR023214 -
Vvi2g622 253 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 22 230 - -
Vvi2g622 253 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 22 230 - -
Vvi2g622 253 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 1 248 - -
Vvi2g622 253 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 22 33 IPR006439 -
Vvi2g622 253 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 121 134 IPR006439 -
Vvi2g622 253 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 152 168 IPR006439 -
Vvi2g622 253 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 170 190 IPR006439 -
Vvi2g622 253 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 1 248 - -
Vvi2g622 253 Pfam Haloacid dehalogenase-like hydrolase 25 207 IPR041492 -
Vvi2g622 253 SUPERFAMILY HAD-like 20 240 IPR036412 -
Vvi2g622 253 Gene3D Putative phosphatase; domain 2 37 106 IPR023198 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g622 - - - vvi:100252262 470.314
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g622 Vvi15g249 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g622 . Blo03g00108 . . . Bpe07g00230 . . Cmo06g00860 . . . . . Sed07g1320 . . Bhi11g00108 Tan01g2131 Cmetu06g0814 . . . . . . . . . . . . . . . Lsi07g01233 . . Cme06g02502 . . . . . . . Bma12g00230 . . . Cma06g00838 . . . . . . . . . . . . . . . . . . . . Csa03g00207 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002057 0 2 1 2 1 2 3 2 2 2 2 2 3 3 3 3 2 3 2 2 3 2 2 3 2 3 1 2 3 3 66