Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g63 ATGGAACAGAAACACATTTTGTTGTCGGCGTTGAGCGTCGGGGTTGGAGTTGGAGTCGGACTCGGATTAGCTTCCGGCCAGACTGTGAGCAGATGGACTGGTTCTGGTTCTGGTTCTTCGGACGCTCTTACCGCCGAGAAAATGGAGCAGGAGTTGCTCAGACAGGTGGTTGAGGGCAGAGAAAGCAAGGTCACGTTTGATGAATTTCCATATTACCTCAGTGAGCAAACACGGGTGTTACTAACGAGTGCTGCCTATGTCCACTTGAAGCAAGCTGAATTCTCCAAGTATACACGAAACCTTTCTCCTGCAAGTCGGGCTATTTTGCTCTCAGGACCAGCAGAACTTTACCAGCAAATGCTTGCCAAGGCTTTAGCACACTATTTTGAAGCCAAGCTGTTGCTGCTAGATGTAACAGACTTTTCATTGAAGATTCAGAACAAATATGGTAGTGCCAGCAAAGAATCTTCTATGAAAAGGTCTATTTCAACAACAACTCTAGAGCGGGTTTCTAGTTTACTTGGTTCACTTTCTCTCATTCCACAAATGGAGGAAAGCAAAGGCACATTACGAAGACAAAGTAGTGGCATGGATATTGCATCGAGGGGAAGAGATTGTTCTTGCAATCCTCCAAAGATTCGGAGAAATGCCTCTGCCTCAGCTAATATGAATAACATGGCCTCACAATTTGCACCATATCCAGCACCACTCAAGCGCACAAGCAGCTGGTCTTTTGATGAGAAGCTTCTTATACAGTCCCTTTACAAGGTTCTGGTTTCGGTTTCAAAAACCAGCCCACTTGTTCTATATATTAGAGATGTTGAGAAGCTTCTATCTAGATCACAGAGGATATACAACTTGTTCCAGAAAATGTTGAACAAACTTTCAGGATCAATACTGATCCTTGGCTCACAAATCATAGATCCGGATGATGACTACGGAGATGTGGATCAGAGGCTTACTGCTCTATTCCCTTACAACATTGAAATCAGACCACCTGAAGATGAAAACCACTTTGTTAGTTGGAAGACTCAACTGGAGGAGGATATGAAAATGATACAGCTTCAGGATAACAAAAACCACATCATTGAAGTACTTGCCGCGAATGATCTTGACTGTCGAGATCTTGATTCGATCTGCCTGGAAGACACCATGGTTCTCAGTAACTACATAGAAGAAATTGTGGTGTCAGCAGTTTCTTATCATTTGATGAATAACAAAGATCATGAATACAAAAATGGGAAACTTGTTATTTCATCCAAGAGTTTGGCCCATGGGTTGAGTCTATTCCAGGAAGGTAAGTCTGGCAGCAAAGATACTTCGAAACTCGAAGCGCATGCTGAACCTTCTAAGGAAGCTGGGGGAGAAGAAGGTGCTGGTGTGAAGCCAGCAGCAAAAGCTGAAAGCACAGCTCCAGAAAACAAAAATGAAGCAGGGTCACTTATCGTGGCAGTAAAGGAGGGTGACAATCCAATCCCAGCATCAAAAGCTCCAGAAGTTCCTCCTGACAATGAATTTGAGAAGCGCATCAGACCAGAGGTCATCCCAGCTAGTGAGATTGGTGTGACATTTGCTGATATTGGTGCCATGGATGAGATTAAAGAATCCCTCCAGGAACTTGTAATGCTTCCTCTTCGTAGACCAGACCTTTTTGAAGGAGGCCTTCTAAAGCCTTGCAGAGGAATATTGCTCTTTGGGCCTCCTGGCACTGGGAAAACAATGTTAGCCAAGGCCATTGCCAATGAAGCTGGAGCAAGCTTCATTAATGTGTCCATGTCTACCATCACTTCCAAATGGTTCGGTGAAGATGAGAAGAATGTTCGTGCCTTGTTCACTCTGGCAGCCAAGGTTTCCCCAACTATTATTTTTGTAGATGAGGTTGATAGCATGCTTGGACAGCGGACTAGAGTTGGGGAGCATGAAGCCATGCGGAAGATAAAAAATGAGTTCATGACTCATTGGGATGGACTCTTGACAAAACCGGGTGAGCGGATTCTTGTTCTTGCTGCAACTAACAGGCCATTTGACCTTGATGAAGCCATAATCAGACGCTTTGAGAGGAGGATCATGGTTGGCCTACCATCGGTGGAGAACAGAGAAATGATCATGAAGACTCTTTTGTCAAAAGAAAAAGTTGCAGAAGGATTAGATTTCAAGGAGCTTGCAACCATGACAGAAGGATATAGTGGAAGTGATCTTAAGAACCTGTGCACAACAGCTGCTTATCGGCCAGTCAGGGAGTTAATACAGCAAGAGAGACTTAAGGATTTGGAGAAAAAACGGAGAGCTGAGCAAAGGCTAAGTCCCGACGATGATGACGTGTTTGAAGATACAGAGGAAAGAGTAATTACCCTGAGGCCATTAAACATGGAAGACTTCAGACACGCAAAGAATCAGGTTGCGGCAAGCTTTGCTGCAGAGGGATCGATAATGAGTGAGCTGAAGCAGTGGAACGACTCGTATGGGGAAGGAGGTTCGAGGAAGAAGCAGCAATTATCTTACTTCCTATAA 2511 44.4 MEQKHILLSALSVGVGVGVGLGLASGQTVSRWTGSGSGSSDALTAEKMEQELLRQVVEGRESKVTFDEFPYYLSEQTRVLLTSAAYVHLKQAEFSKYTRNLSPASRAILLSGPAELYQQMLAKALAHYFEAKLLLLDVTDFSLKIQNKYGSASKESSMKRSISTTTLERVSSLLGSLSLIPQMEESKGTLRRQSSGMDIASRGRDCSCNPPKIRRNASASANMNNMASQFAPYPAPLKRTSSWSFDEKLLIQSLYKVLVSVSKTSPLVLYIRDVEKLLSRSQRIYNLFQKMLNKLSGSILILGSQIIDPDDDYGDVDQRLTALFPYNIEIRPPEDENHFVSWKTQLEEDMKMIQLQDNKNHIIEVLAANDLDCRDLDSICLEDTMVLSNYIEEIVVSAVSYHLMNNKDHEYKNGKLVISSKSLAHGLSLFQEGKSGSKDTSKLEAHAEPSKEAGGEEGAGVKPAAKAESTAPENKNEAGSLIVAVKEGDNPIPASKAPEVPPDNEFEKRIRPEVIPASEIGVTFADIGAMDEIKESLQELVMLPLRRPDLFEGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRTRVGEHEAMRKIKNEFMTHWDGLLTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREMIMKTLLSKEKVAEGLDFKELATMTEGYSGSDLKNLCTTAAYRPVRELIQQERLKDLEKKRRAEQRLSPDDDDVFEDTEERVITLRPLNMEDFRHAKNQVAASFAAEGSIMSELKQWNDSYGEGGSRKKQQLSYFL* 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 709762 719214 - Vvi2g63 Vvi2g63 782762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g63 836 ProSitePatterns AAA-protein family signature. 665 684 IPR003960 GO:0005524|GO:0016887
Vvi2g63 836 MobiDBLite consensus disorder prediction 437 455 - -
Vvi2g63 836 Pfam AAA+ lid domain 716 758 IPR041569 -
Vvi2g63 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 380 IPR027417 -
Vvi2g63 836 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 522 772 IPR027417 -
Vvi2g63 836 Gene3D - 521 693 IPR027417 -
Vvi2g63 836 Pfam ATPase family associated with various cellular activities (AAA) 562 692 IPR003959 GO:0005524|GO:0016887
Vvi2g63 836 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 836 - -
Vvi2g63 836 SMART AAA_5 558 695 IPR003593 -
Vvi2g63 836 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 836 - -
Vvi2g63 836 CDD AAA 528 693 - -
Vvi2g63 836 Gene3D - 694 774 - -
Vvi2g63 836 MobiDBLite consensus disorder prediction 433 477 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g63 - - - vvi:100244958 1552.73
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g63 Vvi16g810 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g63 Blo02g01127 . . Bda08g00498 Bpe05g00666 . . . . Cmo16g00624 . . . . . Cpe14g00486 Cpe05g00632 . . . . . . . Cla07g00737 Cam07g0790 Cec07g0855 Cco07g0825 Clacu07g0771 Cmu07g0780 Cre07g1131 . . Cone6ag0820 Cone9ag0819 . . . Cme07g01607 . . . . . . Bma05g00841 . . Cmo02g01109 . . Cma16g00575 . . . . . . . . . . . . . . . . . . . Csa04g00619 Chy07g01193 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75