Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g630 ATGCAATCGCTGGCCTATGCTGCTACATGCAGCGATTGTTTCACTCATTCTAGAGCAGCTTACTACCCAAATTCAGATGAACTAGGAACAGAAACTGGGCAATGTGGATACGGTTCATTTGGAGCTACAATCAATGATGGAGATGTATCAGCTGCATCTGATCTCTATAGAGATGGTGTGGGCTGCGGTGCTTGTTACCAGGTGAGATGTACCAACAGTAACTATTGCTCAGACAAAGGAGTGACTGTAGTGATCACTGATCATGGCTCGGGTGATCGTACTGACTTTATTATGAGCAAGCGAGCCTTTGGTCGAATGGCTCAGACTACTGATGCAGCTGCATCTCTATTGGCTCTTGGTGTGGTCGATATCGAATACAGAAGGGTATCATGCAGCTACCCCAGCAAAAATATAACAATCAAGATTGATGAGAACAGCAATTTTCCTTATTACATGGCTTTTGTCATATGGTACCAACAAGGCATGAAGGACATAACTGCTGTCCAACTATGTGAGACCCAGAATTTCGTGTGCAAGCTACTGGATAGGAGCTATGGTTCAGTATGGACGACTAATTCACCCCCAAGTGGGACCCTTTCTCTAAGGATGCTATTTAGTGGCGATGATGGAGATGAGACATGGGTTGTTCCTATTAACAACATACCTGAAAACTGGAAAGCTGCAGACATATATGACACAGGAGTTCAAGTGAACTAA 717 44.07 MQSLAYAATCSDCFTHSRAAYYPNSDELGTETGQCGYGSFGATINDGDVSAASDLYRDGVGCGACYQVRCTNSNYCSDKGVTVVITDHGSGDRTDFIMSKRAFGRMAQTTDAAASLLALGVVDIEYRRVSCSYPSKNITIKIDENSNFPYYMAFVIWYQQGMKDITAVQLCETQNFVCKLLDRSYGSVWTTNSPPSGTLSLRMLFSGDDGDETWVVPINNIPENWKAADIYDTGVQVN* 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6705374 6707155 + Vvi2g630 Vvi2g630 783329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g630 238 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 1 238 - -
Vvi2g630 238 Pfam Lytic transglycolase 53 126 IPR009009 -
Vvi2g630 238 PRINTS Expansin/Lol pI family signature 31 49 IPR007118 GO:0005576
Vvi2g630 238 PRINTS Expansin/Lol pI family signature 119 135 IPR007118 GO:0005576
Vvi2g630 238 PRINTS Expansin/Lol pI family signature 178 192 IPR007118 GO:0005576
Vvi2g630 238 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Vvi2g630 238 Gene3D - 2 132 IPR036908 -
Vvi2g630 238 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 32 136 IPR007112 -
Vvi2g630 238 Gene3D - 134 237 IPR036749 -
Vvi2g630 238 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 150 233 IPR007117 -
Vvi2g630 238 SUPERFAMILY PHL pollen allergen 136 232 IPR036749 -
Vvi2g630 238 Pfam Expansin C-terminal domain 138 217 IPR007117 -
Vvi2g630 238 PANTHER EXPANSIN-B3 1 238 - -
Vvi2g630 238 SUPERFAMILY Barwin-like endoglucanases 4 135 IPR036908 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g630 - - - vvi:100262694 498.049
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g630 . Blo03g00121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0450 Cone12ag0440 . . . . Chy04g00051 . . . . . . . . . . . . . . . . . . . . . . . . . Cla09g01175 Cam09g1240 Cec09g1256 Cco09g1286 . . Cre09g1204 . Csa03g04649 . Cme04g00065
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012023 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 0 1 4 1 1 30