Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g631 ATGGTTCGTAAATGTGTTGCTCCCAATCATTACACCTTCCCACTTTTGGTGAAGGTTTGCTGGGAGATTGGGTCGATTGGAGACGGGGAAAAGATCCATGCCCGCATATTGAAGTTTGGGTTTGAATTGGATTTGTTTGTTCGAAACTCCTTGATCCATATGTATTCAGTTTGTGGGAGAATTGGGGATGCAAGAGCAATGTTTGAGGTGTGTTCTATATCGGATTTGGTGACTTGGAATTCCATGATTGATGGGTATGTAAAGAATGGGGAGATCGGTGCTGCTCGTGAACTTTTTGAGGAAATGCCTGAGAGAGACCTATTTAGTTGGAATTCGATGATTGCAGGGTATGTTGGAAATGGAGACATGACGGCTGCGGAAGACTTGTTCAACAAGATGCCATTTAGAGATATTGTTTCCTGGAACTGTATGATTGACGGATATGCTCAGGTTCAGAATATGGAAATTGCTTGTGAGCTTTTTAATTGGATGCCATATCGAAATGTAGTTTCTTGGAATATCATGTTGGCTCTTTATGTGCGGATCAAAGACTATGATGAGTGTTTGCGCATGTTTGATAAGATGATGGGGGAGACTATGCCAAACGAGGCTACCCTTGTGAGTGTCTTGACTGCTTGTGCACACTTAGGGAGGCTTGATAGGGGCAAATGGATTCATTCTTACATTAAAAATAATAGGGTGATTGAACCTGATGTGTTACTTTCAACTGCGCTCTTGACAATGTATGCAAAGTGTGGAGCCATGGATTTGGCTAGAGATGTGTTTGACAAGATGTCCAACAGAAGTGTTGTATCTTGGAATTCGATGATTATGGGATATGGCATGCATGGCCAGGCAGATAAAGCCCTAGAAATGTTCTTGGATATGGAAAAGAGAGGTCCAATGCCAAATGATGCTACTTTTATATGTGTTTTAAGTGCATGTGCACACTCTGGAATGATTTTGGAGGGTTGGTGGTACTTTGATCTAATGAGGCGGGCTTATAAGATCGAACCGAAGGTTGAGCACTATGGTTGCATGGTTGATCTTCTTGGGCGGGCAGGTTTGATGAAAGATTTGGAAGAGCTTATAAGGAAGATGCCGATGGAGGGGGGAACTGCCTTATGGGGAGCACTACTTTCTGCTTGTAGGACTCACTCAAATTCAGAGCTTGCAGAGATCGTGGCCAAAAGGCTAATTGAGTTGGAACCAAGGGATATTGGGCCCTACTTGCTGTTATCAAATATATATGCTGCAGAAGGAAAATGGGACGATGTAGAAATTGTCAGAAAGATGATGAAGGAAAGGGGTTTAACAAAAACAACAGGTCTATCCTCATCTCTAAGGAGGAAAATAAAGCCAAAAAAAAAAAAAAAAACATATTAA 1386 41.85 MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGLSSSLRRKIKPKKKKKTY* 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6707242 6711024 - Vvi2g631 Vvi2g631 783330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g631 461 Gene3D Tetratricopeptide repeat domain 221 337 IPR011990 GO:0005515
Vvi2g631 461 PANTHER - 154 453 - -
Vvi2g631 461 PANTHER - 6 169 - -
Vvi2g631 461 Pfam PPR repeat 170 197 IPR002885 -
Vvi2g631 461 Pfam PPR repeat 343 371 IPR002885 -
Vvi2g631 461 Pfam PPR repeat 49 69 IPR002885 -
Vvi2g631 461 Pfam PPR repeat 243 268 IPR002885 -
Vvi2g631 461 Pfam PPR repeat 108 134 IPR002885 -
Vvi2g631 461 Pfam PPR repeat 77 106 IPR002885 -
Vvi2g631 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Vvi2g631 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Vvi2g631 461 Gene3D Tetratricopeptide repeat domain 1 134 IPR011990 GO:0005515
Vvi2g631 461 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Vvi2g631 461 SUPERFAMILY TPR-like 178 431 IPR011990 GO:0005515
Vvi2g631 461 Pfam E motif 386 445 IPR046848 -
Vvi2g631 461 Gene3D Tetratricopeptide repeat domain 135 220 IPR011990 GO:0005515
Vvi2g631 461 Pfam PPR repeat family 137 169 IPR002885 -
Vvi2g631 461 Pfam PPR repeat family 269 316 IPR002885 -
Vvi2g631 461 PANTHER OS01G0913400 PROTEIN-RELATED 154 453 - -
Vvi2g631 461 PANTHER OS01G0913400 PROTEIN-RELATED 6 169 - -
Vvi2g631 461 TIGRFAM PPR: pentatricopeptide repeat domain 170 196 IPR002885 -
Vvi2g631 461 TIGRFAM PPR: pentatricopeptide repeat domain 108 139 IPR002885 -
Vvi2g631 461 TIGRFAM PPR: pentatricopeptide repeat domain 271 304 IPR002885 -
Vvi2g631 461 TIGRFAM PPR: pentatricopeptide repeat domain 77 106 IPR002885 -
Vvi2g631 461 TIGRFAM PPR: pentatricopeptide repeat domain 139 162 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g631 - - - vvi:100267844 916.761
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069354 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1