Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g634 ATGGATCCAGGTCGCTATGGTCTCCAGCAAGGATGGGATAATAACAGCGCTTTGGAGGGGTATGGAGCTGTTCATGACGCAAACTTCCGGGTTGGTGGTTCATATGATGATAGGAGGTTCCTAGATGAGCGGTTCTCAAGGGATAATGTCTATCCAAGGAATGCCTTCCATCGAGATATACTAGAGAGAGAGAACTACCCCCCTCCTCCATCTGCAGTTGGTCTTTGGCCTCAAACAAGAAGAAGAAGCTATGAGGAGGAATATTCACTTGACAGGGAATCTAGACGACATGAGAAGCCATACCTGGATTCTTACCATGAAATGGATACTTTTCGTGAAGCGGACAAGTACCATGAAGTTGATACATTTCAAGAATATGATAAGTTTCGGGATGGCTATCGTGGTATTGACAACTACCGTGATCATGGATTTGATAGGCCTTCTAGGTTTGGGGCACGTGATCGAGATGATCATGCATACGATGATTATGACTATCGATCTCGTCTTTCTCATCAAAATAGGGAGGATAGTCGTGAGAGGGACTATGACTATGGCAGACATAGTTATGATTCTGATTATGATAGAGGTAGTAGGAGAGACGGTAATTGGAGGAGGCGTGAATCACGTGACCGTGAGCGGGATAAGAGAGGTTTGAGTCGAGAAAGAGATCAGAGTCCACCTAGAAAGCATGAGCGTTCTAGGTCTCGTGGACGTGAAGATCGCCCTAGGTCAAGGTCTCCTCGTGGTCGGAGCCATGGTCGAAGTCATCGAGAGGACAGCTATGATGATGGTCGACATGAAAGGAGTGAAAAACGAAGGGATCGTGAAGATAAACGTCAGCATGAACATTATTCTGTGGCCCCTTCTGCTACTGTTGTTGTGAAGGGTCTATCACAGAAGACTACTGAGGAAGATCTGTACCAGATCCTTGCTGAATGGGGACCCCTTCGGCATGTTCGTGTGATTAAAGAACGAAGTTCTGGCATATCTCGAGGATTTGCTTTTATTGATTTTCCTTCTGTGGGAGCAGCACGTGTGATGATGGATAAAATTGGAGATGATGGTCTTGTTGTGGATGGCAGGAAGCTTTTCTTTGAGTACAGTAGCAAGCCAACTGGGGGGGCAGGTGGACCGTTTGGACAGGAGAACACATTCAAATCAGGTCATATTAACCATAAAAGCATGACAGTACCATCAGACTGGATGTGCATCATATGTGGCTGTGTCAATTTTGCCCGGCGTACATCCTGCTTTCAGTGTAATGAAGTCCGGACTGATGAATCTCCACCAGCAGATATAGCATCATCAAATGCAACATCGCTAGGAAAGAAAGGATCAGAGGCAGGTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAGGATCTTCGACTTGTTCGAGATAAATTCACTCATGTATCAAGGGGATTTGCATTTGTACATTTTCATTCGGTAGAGGATGCTACCAAAGCTCTTGAAGCAACAAATGGAACAACTCTGGAGAAAAATGGGCAGATTTTACGGGTAGCTTATGCAAAAAGCATTCTGGGTCCTGGATCAGGCACAACAGGATCTTCACAATCAAGCAGCCTTGCAGCAGCTGCAATTGAGGCAGCTACATTTGCTCAACAATATGATGCTGTTGGATGGGCGCCTAAAGAATATAATCCAGATGACAAACAGTCTACTGGTGGGCAGGATCGAGGAAACGGTGACCCTGCAGGTCAAAAGGATGGTTCAGCTCCACAGTCTGGTTTTGTGTGGGATGAAACATCTGGCTATTATTATGATGCTGCTTCTGGGTTCTACTATGATGGAAACACAGGCTTGTATTATGATGGTAACGGTGGAACATGGTATTCTTATGATCACTCAACTCAGCAGTATGTCCCTTGCACTGATCAGAATGACACTAAGACATCTGGAAAACAATCTGAGTCTTCTAAGGCATCAGATAGTTCTAATAGTAGAAAAGTAGTTATCTCTGCACCAGCTGCTACCATAACATCGAATGAGAAAGCTGCCTCACTGCCAGATGCTGTCCAGGCTGCTGCTACAGCAGCAATGGCTGCAGAAAAGAAAGAGAAAGAGAAGTTAAAGGAAATAAAACTTGCTTCCAAGAGCAGCATTCTGGCTAACAAAAAGAAAATGAGTAATGTACTGACAATGTGGAAGCAGAGGAGTCATGAAGGGCAAGCAACCCGCGTGGCTCTTGATGACAACCAGCCATCTGCTGCAGTTGATGACAGGCCCAATTCTATTGGGCCATCCCCGAAAGGCAAGTTCAGAACTGATGTGGTGACTACAAAGGAGCATACAGCAGCCTCTGGAGGATTTACTACAAGCACTCCTGCCCTGACTGTTGGGGGAGTTTCTACTTCTGCTCCTGCTGCATACACTGCAGGTTCATCTTCATCAATAAATTCAGATACAACCTTGACAACCCCTTTTAGAACAGACGCATCTGCATTGGGTTCTTATACTCCACCTGTGGCTGCTGGGAGTGGCAAGAGGAGGTTTTCTGAAATGCCAGTACAGTTGGCTTCTACTCAGAAGGAACAGCCTCATACTACTTATAGGGATCGTGCGGCTGAGAGAAGGAGCTTGTATGGTTCATCATCTTCTACAGGGGACAGTCTGTCTGACCTTGGGATTGGGGACTCAACCCGTGACTCAGCTTTCAAAAAGGGTTCTCTAGATTCAATGCCTTTCCCCCCTGGTGTTGGGGGAGGGCGTGGGATGGGAGATGCTAATGGCAATGTTCAGAGTTATGAGGTGATTACAGCGGACAAAGCAATTGATGAAAGCAACGTAGGCAATCGGATGCTTCGTAGCATGGGATGGCAGGAAGGCTCGGGTTTAGGAAAAGATGGGAGTGGCATGGTAGAGCCGGTCCAAGCACAAGCCATGGATAGTAGAGCTGGACTTGGGAGTCATCAGAAGAAGTTGGATCCAGGTCTTGAGGTGCAGCCTGGGGATAGTTATAGAACTCTCATTCAAAAGAAGGCACTTGCCAGGTTCCAAGAGATGTCTTAA 3090 46.02 MDPGRYGLQQGWDNNSALEGYGAVHDANFRVGGSYDDRRFLDERFSRDNVYPRNAFHRDILERENYPPPPSAVGLWPQTRRRSYEEEYSLDRESRRHEKPYLDSYHEMDTFREADKYHEVDTFQEYDKFRDGYRGIDNYRDHGFDRPSRFGARDRDDHAYDDYDYRSRLSHQNREDSRERDYDYGRHSYDSDYDRGSRRDGNWRRRESRDRERDKRGLSRERDQSPPRKHERSRSRGREDRPRSRSPRGRSHGRSHREDSYDDGRHERSEKRRDREDKRQHEHYSVAPSATVVVKGLSQKTTEEDLYQILAEWGPLRHVRVIKERSSGISRGFAFIDFPSVGAARVMMDKIGDDGLVVDGRKLFFEYSSKPTGGAGGPFGQENTFKSGHINHKSMTVPSDWMCIICGCVNFARRTSCFQCNEVRTDESPPADIASSNATSLGKKGSEAGPIHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALEATNGTTLEKNGQILRVAYAKSILGPGSGTTGSSQSSSLAAAAIEAATFAQQYDAVGWAPKEYNPDDKQSTGGQDRGNGDPAGQKDGSAPQSGFVWDETSGYYYDAASGFYYDGNTGLYYDGNGGTWYSYDHSTQQYVPCTDQNDTKTSGKQSESSKASDSSNSRKVVISAPAATITSNEKAASLPDAVQAAATAAMAAEKKEKEKLKEIKLASKSSILANKKKMSNVLTMWKQRSHEGQATRVALDDNQPSAAVDDRPNSIGPSPKGKFRTDVVTTKEHTAASGGFTTSTPALTVGGVSTSAPAAYTAGSSSSINSDTTLTTPFRTDASALGSYTPPVAAGSGKRRFSEMPVQLASTQKEQPHTTYRDRAAERRSLYGSSSSTGDSLSDLGIGDSTRDSAFKKGSLDSMPFPPGVGGGRGMGDANGNVQSYEVITADKAIDESNVGNRMLRSMGWQEGSGLGKDGSGMVEPVQAQAMDSRAGLGSHQKKLDPGLEVQPGDSYRTLIQKKALARFQEMS* 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6747212 6761452 + Vvi2g634 Vvi2g634 783333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g634 1029 MobiDBLite consensus disorder prediction 760 781 - -
Vvi2g634 1029 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 370 IPR000504 GO:0003723
Vvi2g634 1029 ProSiteProfiles G-patch domain profile. 953 999 IPR000467 GO:0003676
Vvi2g634 1029 MobiDBLite consensus disorder prediction 989 1009 - -
Vvi2g634 1029 Pfam G-patch domain 954 995 IPR000467 GO:0003676
Vvi2g634 1029 SMART zf_4 399 423 IPR001876 -
Vvi2g634 1029 MobiDBLite consensus disorder prediction 170 284 - -
Vvi2g634 1029 SUPERFAMILY RNA-binding domain, RBD 285 380 IPR035979 GO:0003676
Vvi2g634 1029 Gene3D - 434 604 IPR012677 -
Vvi2g634 1029 MobiDBLite consensus disorder prediction 170 287 - -
Vvi2g634 1029 ProSitePatterns Zinc finger RanBP2-type signature. 401 420 IPR001876 -
Vvi2g634 1029 MobiDBLite consensus disorder prediction 570 601 - -
Vvi2g634 1029 CDD RRM1_RRM2_RBM5_like 288 368 - -
Vvi2g634 1029 MobiDBLite consensus disorder prediction 137 158 - -
Vvi2g634 1029 Gene3D - 392 427 - -
Vvi2g634 1029 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 349 IPR000504 GO:0003723
Vvi2g634 1029 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 454 520 IPR000504 GO:0003723
Vvi2g634 1029 SUPERFAMILY RNA-binding domain, RBD 450 538 IPR035979 GO:0003676
Vvi2g634 1029 MobiDBLite consensus disorder prediction 649 676 - -
Vvi2g634 1029 MobiDBLite consensus disorder prediction 861 934 - -
Vvi2g634 1029 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 452 532 IPR000504 GO:0003723
Vvi2g634 1029 SUPERFAMILY Ran binding protein zinc finger-like 393 427 IPR036443 -
Vvi2g634 1029 SMART G-patch_5 951 997 IPR000467 GO:0003676
Vvi2g634 1029 Gene3D - 221 373 IPR012677 -
Vvi2g634 1029 ProSiteProfiles Zinc finger RanBP2 type profile. 397 426 IPR001876 -
Vvi2g634 1029 MobiDBLite consensus disorder prediction 886 904 - -
Vvi2g634 1029 SMART rrm1_1 291 366 IPR000504 GO:0003723
Vvi2g634 1029 SMART rrm1_1 453 528 IPR000504 GO:0003723
Vvi2g634 1029 CDD RRM1_RRM2_RBM5_like 450 530 - -
Vvi2g634 1029 PANTHER FI21118P1 212 1028 - -
Vvi2g634 1029 PANTHER FI21118P1 38 224 - -
Vvi2g634 1029 Pfam OCRE domain 601 649 IPR041591 -
Vvi2g634 1029 PANTHER RNA-BINDING PROTEIN 38 224 - -
Vvi2g634 1029 PANTHER RNA-BINDING PROTEIN 212 1028 - -
Vvi2g634 1029 CDD OCRE_SUA_like 597 650 IPR035623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g634 K13094 RBM5_10; RNA-binding protein 5/10 - vvi:100250662 1842.01
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g634 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006680 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 7 1 38