Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g637 ATGGATTCACATGAACCGCAGCAACCGCAACAGCAGCAGCATCCTCCACACGGGATGATGATGGGCCCAAATTCATACCATACGAACATGGCGAACACATCTCCGATGATGAACCCTAATTCCGCGGCTATCATGCAGAATAATCGTTTCTCTTTCACTTCTATGGTCGCCTCAAAGCCCGTAGATTCTCCTTACGGCGATGGATCGTCAACTGGTTTGCGGCCTTGTGGGTTCAATATTGAGCCCGCTAAAAAGAAGAGAGGGCGGCCGAGGAAGTACGCCCCCGATGGCAACATTGCATTGGGCTTGGCCCCAACCCCTATTCCTTCCACTGCCGCGCATGGGGACGCTACTGGCACCCCATCTTCGGAGCCTCCGGCGAAGCGGAATAGGGGACGACCCCCAGGGTCGGGCAAAAAACAGCTTGACGCTTTAGGAGCGGCGGGAGTTGGCTTTACTCCACATGTTATTACTGTGAATGTTGGTGAGGACATAGCATCAAAGATCATGGCCTTTTCACAGCAGGGGCCCCGAACAGTTTGCATCCTCTCTGCAAATGGTGCCATCTGCAATGTTACCCTTCGCCAGCCAGCTATGTCTGGTGGTACTATTTCATATGAGGGTCGATTTGATATCATCTCTCTGTCAGGTTCCTTCTTGCTTTCAGAAGATAATGGTAGCCGCCATAGAACTGGTGGTTTGAGTGTGTCCTTAGCAGGTTCAGATGGTAGAGTTCTGGGTGGTGGAGTTGCAGGAATGCTAACGGCAGCAACACCTGTACAGGTTGTGGTAGGTAGCTTCATTGCAGATGGGAAGAAAACAAATACAAATCAGTCTGGGTCTTCATCAGCACCTCCAGCCCAGATGTTGAACTTTGGTGCACCTGTGGTACCGGCCAGTCCCTCTCAAGGGGGCTCAAGCGAATCATCCGATGAAAATGGTGGTAGCCCTCTTAACCGTGGTCCATTACCCTACAATAATGTTAGCCAGCCCATTCATCAAATGCCAATGTACGCAGCTATGGGCTGGCCAAACTCTACCATGAAGATGCTTCCGAATTAA 1062 51.13 MDSHEPQQPQQQQHPPHGMMMGPNSYHTNMANTSPMMNPNSAAIMQNNRFSFTSMVASKPVDSPYGDGSSTGLRPCGFNIEPAKKKRGRPRKYAPDGNIALGLAPTPIPSTAAHGDATGTPSSEPPAKRNRGRPPGSGKKQLDALGAAGVGFTPHVITVNVGEDIASKIMAFSQQGPRTVCILSANGAICNVTLRQPAMSGGTISYEGRFDIISLSGSFLLSEDNGSRHRTGGLSVSLAGSDGRVLGGGVAGMLTAATPVQVVVGSFIADGKKTNTNQSGSSSAPPAQMLNFGAPVVPASPSQGGSSESSDENGGSPLNRGPLPYNNVSQPIHQMPMYAAMGWPNSTMKMLPN* 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6802887 6816991 - Vvi2g637 Vvi2g637 783336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g637 353 CDD DUF296 153 267 IPR005175 -
Vvi2g637 353 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Vvi2g637 353 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Vvi2g637 353 Pfam Plants and Prokaryotes Conserved (PCC) domain 154 267 IPR005175 -
Vvi2g637 353 MobiDBLite consensus disorder prediction 62 143 - -
Vvi2g637 353 SUPERFAMILY AF0104/ALDC/Ptd012-like 152 269 - -
Vvi2g637 353 MobiDBLite consensus disorder prediction 1 18 - -
Vvi2g637 353 MobiDBLite consensus disorder prediction 275 328 - -
Vvi2g637 353 MobiDBLite consensus disorder prediction 300 328 - -
Vvi2g637 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 57 352 - -
Vvi2g637 353 ProSiteProfiles PPC domain profile profile. 148 287 IPR005175 -
Vvi2g637 353 MobiDBLite consensus disorder prediction 1 34 - -
Vvi2g637 353 Gene3D - 154 282 - -
Vvi2g637 353 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 57 352 IPR039605 GO:0003680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g637 - - vvi:100245362 678.707