Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g638 ATGCCGGTGGCTGCTTCCGCTATCTACTTCTTGAATCTCCGGGGCGACGTCCTCATCAATCGCCTCTATCGCGACGATGTCGGGGGAAACATGGTGGACGCCTTTCGGATGCATATAATGCAAACAAAAGAACTTGGCACATGTCCTGTGCGGCAGATTGGAGGTTGCTCTTTCTTTTATATGAGAATCAGCAATGTGTACATTGTGATTGTGGTCAGCAGCAATGCCAATGTAGCTTGTGCATTCAAGTTTGTTGTTGAGGCTGTTGCGCTGTTCAAATCTTATTTTGGTGGGGCTTTCGATGAAGATGCTATTCGTAACAACTTTGTTCTGATTTATGAGCTATTGGATGAAATCATGGACTTTGGTTATCCACAAAATCTTTCTCCAGAAATTTTGAAGCTCTACATCACCCAAGAAGGAGTTCGGTCTCCATTCTCATCCAAGCCTTCAGATAAACCAGTCCCCAATGCAACTTTACAAGTTACAGGTGCTGTTGGTTGGAGGAGAGAGGGCCTTGTTTATAAAAAGAATGAGGTGTTTCTGGATATTGTGGAAAGTGTTAATCTTCTAATGTCTTCCAAAGGTAGCGTTCTACGCTGTGATGTAACTGGAAAAATTCTAATGAAATGCTTCCTCTCTGGAATGCCTGATTTGAAGTTGGGTTTAAATGATAAAATTGGCCTTGAGAAAGAGTCCCAACTTAAATCCCGTCCTGCTAAAAGTGGCAAAACCATTGAGCTTGATGATGTTACTTTCCACCAGTGCGTAAATTTGACGAGGTTTAACTCAGAAAAGACCGTCAGTTTTGTGCCACCAGATGGTGAATTTGAATTGATGAAGTATCGTATCACTGAGGGTGTAAATCTTCCATTCCGAGTATTGCCAACAATTAAGGAACTGGGTCGGACACGCATGGAAGTGAATGTCAAGGTCAAGAGTGTATTTGGCGCAAAAATGTTTGCTCTTGGAGTTGTTATTAAGATTCCAGTACCAAAGCAGACAGCAAAAACGAGTTTCCAAGTTACATCAGGTCGAGCAAAGTATAATGCTGCTACTGATTGTTTGATCTGGAAGATAAGAAAGTTTCCTGGACAAACTGAGCCAACAATGAGTGCAGAAGTAGAGTTGATTTCCACGATGGCAGAAAAGAAGTCTTGGACCAGGCCACCGATTCAGATGGAATTCCAGGTTCCCATGTTTACAGCATCTGGTTTACGCGTTCGGTTTCTTAAGGTCTGGGAGAAGAGCGGGTACAATACCGTTGAGTGGGTGCGCTATATTACCAAAGCCGGTTCATATGAAATTAGGTGCTAG 1317 42.9 MPVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPSDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNAATDCLIWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC* 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6818092 6834743 - Vvi2g638 Vvi2g638 783337

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g638 438 Gene3D - 5 145 - -
Vvi2g638 438 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vvi2g638 438 PRINTS Clathrin coat assembly protein signature 102 129 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vvi2g638 438 PRINTS Clathrin coat assembly protein signature 168 196 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vvi2g638 438 PRINTS Clathrin coat assembly protein signature 248 275 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vvi2g638 438 PRINTS Clathrin coat assembly protein signature 317 332 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vvi2g638 438 PRINTS Clathrin coat assembly protein signature 357 368 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vvi2g638 438 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 166 186 IPR018240 GO:0006886|GO:0016192|GO:0030131
Vvi2g638 438 ProSiteProfiles Mu homology domain (MHD) profile. 177 437 IPR028565 -
Vvi2g638 438 CDD AP-2_Mu2_Cterm 175 437 IPR043512 -
Vvi2g638 438 PIRSF AP_complex_mu 4 438 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vvi2g638 438 Gene3D Mu homology domain, subdomain B 290 437 - -
Vvi2g638 438 PANTHER AP COMPLEX SUBUNIT MU 17 438 - -
Vvi2g638 438 SUPERFAMILY SNARE-like 6 142 IPR011012 -
Vvi2g638 438 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 166 437 IPR036168 -
Vvi2g638 438 PANTHER AP-2 COMPLEX SUBUNIT MU 17 438 - -
Vvi2g638 438 Gene3D Mu homology domain, subdomain B 174 433 - -
Vvi2g638 438 Pfam Adaptor complexes medium subunit family 167 438 IPR028565 -
Vvi2g638 438 CDD AP2_Mu_N 6 144 IPR043532 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g638 K11826 AP2M1; AP-2 complex subunit mu-1 - vvi:100250494 855.899
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g638 Blo02g00997 . . . Bpe05g00534 . . . . . . . . . . . Cpe05g00188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00385 . . . Cmo19g00479 . . . . . Cpe15g00360 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004704 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 1 1 42