Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g642 ATGTTCATCACCTTCATCCATCAATATCTCTCATACCTATTTTCTCTCTCTAAACCCTCCCATGCATGCCACTACTCTGTTAATACCCATAAACCCACTGCTTATGGCCGATACTCCCCTCATTACCTTCTATCACTCATCCATTCTGCCATTAAGTGCACACCTTCTTTGGTAAAGGCTGCTCACCTTGTTGACAACACCAACCACCAGGGCCACTTCCAAAAGGTGTTGACTGCCATTGGGAACTTCTGTATATACTCCATTGCGTTTGGCATAGTACAAGGTGCTTCCACAAAGAGGATGACAGCAATAGAAGAGATGGCTGGAATGGATTTTCTTTGCAGTGACAAGACTGGGACTCTCACCTTCAATAAGCTTACAGTGGGCAAAAGCATGATGGAGATATTTTCAAAGGACGTGGACAGTGATGTGGTGATTCTGCTTGCGGCTAGGGCTTCCTGGGTTGAGAATCAGGATACCATTGATGCCTGCAGCGTGGGAAGGTTGGCTGACCCCGGTGAAAACAAGATCAGAGACAGTTGGAGGACGCACACAGTGCTTTTAATAGTTGATGAATATGCTCGTGGGATGGTCAGTGGTTCTAGATCAACACTTTTTGAAGAGCTTGGACTCTACTACATAGGTCCTGTCGATGGCCATGACATAGATGACCTCGTTGCCATTCTCAAGGAGGTTAAGAGTACCGAGACAACAGGTCCAGTTTTGATCCATGCTGTCATAGAGAAAGGCCACGGATATCCATATGCTGAGAAAGCTGCAGATCACCAACTTCAAAGTAGGGTACCATTCACACCTCAAGTCCACGTGCATGGCCATCTTTGGGCCATAGTGCCATTTCCCATTTCACCTTCTCTAATTTTGAAAAATATTCTTTTAAATCCCTTTCTTCAAATAATTTTCTAG 924 44.91 MFITFIHQYLSYLFSLSKPSHACHYSVNTHKPTAYGRYSPHYLLSLIHSAIKCTPSLVKAAHLVDNTNHQGHFQKVLTAIGNFCIYSIAFGIVQGASTKRMTAIEEMAGMDFLCSDKTGTLTFNKLTVGKSMMEIFSKDVDSDVVILLAARASWVENQDTIDACSVGRLADPGENKIRDSWRTHTVLLIVDEYARGMVSGSRSTLFEELGLYYIGPVDGHDIDDLVAILKEVKSTETTGPVLIHAVIEKGHGYPYAEKAADHQLQSRVPFTPQVHVHGHLWAIVPFPISPSLILKNILLNPFLQIIF* 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6879276 6882848 + Vvi2g642 Vvi2g642 783341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g642 307 Gene3D - 111 125 IPR023214 -
Vvi2g642 307 PANTHER ATPASE 8, PLASMA MEMBRANE-TYPE 56 93 - -
Vvi2g642 307 Gene3D - 95 110 - -
Vvi2g642 307 Gene3D - 126 176 IPR023299 GO:0000166
Vvi2g642 307 PANTHER ATPASE 8, PLASMA MEMBRANE-TYPE 94 176 - -
Vvi2g642 307 Gene3D - 186 275 - -
Vvi2g642 307 PANTHER CALCIUM-TRANSPORTING ATPASE 56 93 - -
Vvi2g642 307 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 197 262 IPR029061 -
Vvi2g642 307 ProSitePatterns E1-E2 ATPases phosphorylation site. 116 122 IPR018303 -
Vvi2g642 307 PANTHER CALCIUM-TRANSPORTING ATPASE 94 176 - -
Vvi2g642 307 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 187 246 IPR005477 GO:0008661|GO:0016114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g642 K01535 - vvi:104877609 205.682