Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g647 ATGAGAATCTACAGATCACTACCACCAAGACCCAAAATTGAGGAGGTTGAAGCAGCCATGACTGTTATCAGGACAGCGGACTGTGAAGAGCAGAAGAGGCTCGAGGAGGTTGCAAGGCAAGAGGTCCCCCAGGGGGTCCCACCTGAGCTCTTCTCTGTTCTGCAGCAGGCGAGGAAGACCATGGTGCTGTTTCAGTGCCATGAGGAGAGGGAAGAGGCTCTTCACTTGGTCGAGAGGAATAAGCTGTTCAATACATTTGATGAGCTCATTCAGAAAGCTTCTGAGGTGGTTTCCGGGGGTGTCCCGATTGAGAAGCAGATTGATTTGGGTGACCCAGTTGGGAAAAGTGGGAGAAAAGATGTGATCAGTGTTGAGAGTTTGATTAAGAGGGGAGAAGATGAGGAATCGGGGGCAGATGGTTTCAAGGGTTTGGTGAGGAGTTCTTCCGCGAAGGCCATTTTCGTTTCAGGTGAGGACGATACCGAGAAGTTCAATCTCATGAAGGTGGCAGCCCTTATTGAAAAAACTGCTAAAATCAAAGCAGGGGTTCTTGATCTTCAAGGCAAGTTGATGGAAAAGATTGAGTGGCTTCCCACATCGATTGGCAAATTATCTGATATCACTGAATTGAACTTGTCTGAAAACCGAATTATGGCTCTCCCATCCACCATGAGTGGCCTCAGAGCCCTAACAAAGCTTGATGTCCACTCAAACCAACTGATCAACCTTCCAGATTCAATTGGGGAATTGGTGAACCTAGCTGATCTCGATCTCCATGCAAACAGATTAAGGTCACTGCCAGCTTCTTTTGGGAATCTGGTGAACCTCATCAATCTCAATTTGAGTTCAAATCAATTCACCCATTTGCCAGACAACATTGGGAGTCTAACAAGCTTGAAGAGACTGAATGTGGATACAAATGAGCTCGAAGAAGTTCCTTATACAATTGGATCATGCACATCACTTTTGGAGCTGAGATTGGATTTCAATCAATTAAGAGCTCTTCCTGAGGCTGTTGGAAAGCTTGAATGCTTGGAGATTCTTACGTTGCATTATAACAGAATCAAAGGGCTGCCAACAACAATTGGTAATCTTTCCAATTTGAGGGAACTTGATGTTAGCTTCAATGAACTTGAATCAGTACCCGAAAACCTCTGCTTTGCGGTCAAGCTCAAGAAATTGAATGTGGGGAAGAACTTTGCAGACTTGAGAGCCTTGCCAAGATCAATAGGGAATCTTGAGATGCTTGAAGAGTTGGACATAAGTGACTGTCAAATAAGAATGCTACCGGATTCTTTTCGGTTCCTGTCTAAATTGAGAGTTCTTCGTGCAGATGAGACTCCATTGGAGGTGCCACCAAGGGAAGTAACTAAACTTGGGGCTCAGGAAGTTGTTCAGTACATGGCTGATCTGACCGCCAAGTGGGAGGCAAGACCCCTATCCTCAAAGAAGAAGGGGTTCTGGTTCTGGGTTTGCTCGATATTCAGAGCTAGAACCAAGAGGACCACTGACAGCAAGGAATCACAAAAGCTTGATGAGTGA 1542 45.53 MRIYRSLPPRPKIEEVEAAMTVIRTADCEEQKRLEEVARQEVPQGVPPELFSVLQQARKTMVLFQCHEEREEALHLVERNKLFNTFDELIQKASEVVSGGVPIEKQIDLGDPVGKSGRKDVISVESLIKRGEDEESGADGFKGLVRSSSAKAIFVSGEDDTEKFNLMKVAALIEKTAKIKAGVLDLQGKLMEKIEWLPTSIGKLSDITELNLSENRIMALPSTMSGLRALTKLDVHSNQLINLPDSIGELVNLADLDLHANRLRSLPASFGNLVNLINLNLSSNQFTHLPDNIGSLTSLKRLNVDTNELEEVPYTIGSCTSLLELRLDFNQLRALPEAVGKLECLEILTLHYNRIKGLPTTIGNLSNLRELDVSFNELESVPENLCFAVKLKKLNVGKNFADLRALPRSIGNLEMLEELDISDCQIRMLPDSFRFLSKLRVLRADETPLEVPPREVTKLGAQEVVQYMADLTAKWEARPLSSKKKGFWFWVCSIFRARTKRTTDSKESQKLDE* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6975040 6977508 - Vvi2g647 Vvi2g647 783346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g647 513 ProSiteProfiles Leucine-rich repeat profile. 275 296 IPR001611 GO:0005515
Vvi2g647 513 SMART LRR_bac_2 319 338 - -
Vvi2g647 513 SMART LRR_bac_2 296 315 - -
Vvi2g647 513 SMART LRR_bac_2 227 246 - -
Vvi2g647 513 SMART LRR_bac_2 365 384 - -
Vvi2g647 513 SMART LRR_bac_2 388 409 - -
Vvi2g647 513 SMART LRR_bac_2 204 223 - -
Vvi2g647 513 SMART LRR_bac_2 413 432 - -
Vvi2g647 513 SMART LRR_bac_2 250 269 - -
Vvi2g647 513 SMART LRR_bac_2 342 361 - -
Vvi2g647 513 SMART LRR_bac_2 273 292 - -
Vvi2g647 513 PANTHER LEUCINE-RICH REPEAT-CONTAINING 2 498 - -
Vvi2g647 513 Pfam Leucine rich repeat 252 309 IPR001611 GO:0005515
Vvi2g647 513 Pfam Leucine rich repeat 321 378 IPR001611 GO:0005515
Vvi2g647 513 Pfam Leucine Rich Repeat 416 436 IPR001611 GO:0005515
Vvi2g647 513 Gene3D Ribonuclease Inhibitor 160 467 IPR032675 -
Vvi2g647 513 SUPERFAMILY L domain-like 184 453 - -
Vvi2g647 513 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 5 2 498 - -
Vvi2g647 513 ProSiteProfiles Leucine-rich repeat profile. 367 388 IPR001611 GO:0005515
Vvi2g647 513 SMART LRR_typ_2 365 388 IPR003591 -
Vvi2g647 513 SMART LRR_typ_2 413 435 IPR003591 -
Vvi2g647 513 SMART LRR_typ_2 296 319 IPR003591 -
Vvi2g647 513 SMART LRR_typ_2 342 364 IPR003591 -
Vvi2g647 513 SMART LRR_typ_2 273 295 IPR003591 -
Vvi2g647 513 SMART LRR_typ_2 250 272 IPR003591 -
Vvi2g647 513 SMART LRR_typ_2 204 226 IPR003591 -
Vvi2g647 513 SMART LRR_typ_2 320 341 IPR003591 -
Vvi2g647 513 SMART LRR_typ_2 227 248 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g647 - - - vvi:100257457 989.949
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g647 . . . . . . Bma07g00954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00105 . . . . . . . Cmo19g00475 . . . . . Cpe15g00356 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006201 2 1 3 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38