Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g648 ATGCAAGCTGCTAGAAAGCTTAGTCATGATCTGACAGAGCTGAAGATGTTGAGAATGGAGATGGAGGAGACTCAACAGTTAAAGAAAGGGAAACAAACCCTTGAAGATACAACCATGAAGAGGCTCTCAGACATGGAGAATGCTTTGAGGAAGGCTAGTGGTCAAGTGGATCGTGCAAATGCAGCTGTGAGAAGGCTTGAGACTGAGAATGCAGAAATCAGAGCAGAGATGGAAGCTTCAAAATTAAGTGCATCAGAGTCAGTTTTAACCTGTTTAGAGGTTGCAAAAAGGGAGAAGAAGTGCCTGAAGAGGCTTTTGGCTTGGGAGAAACAAAAAACTAAGTTGCAGGAGGAGATTGGGGAGGAGAAGAGGAAGATAGTGGACTTACAACAACAGATGGTCCGAGTTGAGCAGGCACAGAAAGAAGCTGAGGTGAAGTGGAGGCAGGACTTGAAGGCTAAAGAGCTAGCCTTTGTACAAGTGGAGGAGGAACGACGTGCCAAGGAGGCAGCTGAGGCTAATAATAAAAGGAAGCTTGAGGCTCTGCGTCTAAAAATTGAGATAGACTTCCAGCGTCACAAGGATGATCTACAAAGACTTGAGCAGGAACTTTCTCGTCTTAAAGTGTCTGCTCAATCCACTGAGCTAGTTCATCCGTTGAATACATTACCTAATCGAGACTGTGAGGGGGCAAAGCCCCAAGGAGAAACAATTGCAAGGTTGCTTCATGAATTGGACAAACTGGAGGATTCTTCAGAGAAAGGAGTGAACAGTGACAGGGAATGCATAATTTGTTTAAAAGATGAAGTTTCTGTTGTATTCCTCCCATGTGCTCACGAGGTCCTGTGTGCCAACTGCAACGAGGATTATGGGAAAAAGGGTAAAGCCACTTGCCCATCCTGCAGGGCTCCAATTGAGCAGAGAATCCGTACTTTTGGTGCTAGTTCATAG 951 45.32 MQAARKLSHDLTELKMLRMEMEETQQLKKGKQTLEDTTMKRLSDMENALRKASGQVDRANAAVRRLETENAEIRAEMEASKLSASESVLTCLEVAKREKKCLKRLLAWEKQKTKLQEEIGEEKRKIVDLQQQMVRVEQAQKEAEVKWRQDLKAKELAFVQVEEERRAKEAAEANNKRKLEALRLKIEIDFQRHKDDLQRLEQELSRLKVSAQSTELVHPLNTLPNRDCEGAKPQGETIARLLHELDKLEDSSEKGVNSDRECIICLKDEVSVVFLPCAHEVLCANCNEDYGKKGKATCPSCRAPIEQRIRTFGASS* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6982110 6987583 + Vvi2g648 Vvi2g648 783347

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g648 316 PANTHER OS05G0141500 PROTEIN 1 315 IPR046934 -
Vvi2g648 316 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 315 - -
Vvi2g648 316 ProSiteProfiles Zinc finger RING-type profile. 262 302 IPR001841 -
Vvi2g648 316 Coils Coil 42 83 - -
Vvi2g648 316 SMART ring_2 262 301 IPR001841 -
Vvi2g648 316 SUPERFAMILY RING/U-box 261 308 - -
Vvi2g648 316 Coils Coil 183 217 - -
Vvi2g648 316 Coils Coil 161 181 - -
Vvi2g648 316 Coils Coil 105 146 - -
Vvi2g648 316 Pfam Zinc finger, C3HC4 type (RING finger) 259 307 - -
Vvi2g648 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 313 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g648 - - - vvi:100249004 597.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g648 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005960 1 2 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37