Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g651 ATGGCTGCTACATTGCTTTCACCTCACCTTCTCTTAAACCCTAAACTATCCATACAAAACTCTGCTTCTAAATTCCCAACACCCAAATCCCGCTCAACCCCCAAAATTAGGGCAGCCTTCTCCGACCCATTTGTCCTCCAGATTGCAGAAAGCCTAGAGGACTCTCTCTCTTCTTCTTCAACCTCTTCTCCACCACCTCTCCAAAAGCTCAGAGACGCCTCCTCACAAACCGTACTTTCTACTCCATGGCCTTCTCGCAAAGACGAGCCCTTCCGCTTCACAGACACTTCCCTTATCAGATACTCCCAAGTCACCCCTATTTCACACCCACCAACTTCAATCGCCATTTCCACCGACACCCAATTTCCCAATCTCTCCATCGTGGATGGCCACATTGTATATTCTCTCTCCAATTTGTCCCAATTGCCCACTGGCGTTTTCGTAGGTTCCCTGTCGAGCCTCCCTTCTGAAACCATCACGAAAAAGGTGTCTGAATTTGTGGCCAATTTTGAAGGAGACCTGTTTTGGTCCCTCAACGGGTTGGGCACACCGGACATGGCTGTTGTGTATGTTCCGGCTGGGTGTCGCGTGGAAATGCCCCTTCATATTGTGTATTATTCCGTTGAGGGTGGGGATATCGGGTCTAAGAAGTTACCTGTGTCAAATCCAAGGGTTTTTGTCTTGGTGGAGGAGGGCGGGGAGATTGGTGTGATTGAGGAGTATGTGGGTGTAGGTGAGAACAAGTGTTATTGGGCCAATACAGTTACTGAGGTGGTGATTGGGGAAGGGGCTAAAGTGAAGCATTCTTACATTCAAAGCCAGTCTTTGAGTGCTGCTCATATCAAGTGGACTTCAGTTCAGCAGGGATCTTCTAGTTCCTATGAGCTTATAGAGGTAAGTACTGGTGGAAAATTGAGCAGGCATAATGTCAACATCCAGCAAGTTGGCCCAGATACAGTAACAGAGTTGTCAGCTTTTCACTTGTCTGTTGGTGACCAAACACAAGATCTACATAGTAGACTAGTCCTGGACCATCCACGAGGGTACTCCCGGCAACTTCACAAGTGCATTGTGGCTCATTCACTAGGACAAGCTGTATTTGATGGGAATATAAAAGTCAACAGATACGCACAGCGGACAGATGCAGGACAACTAACAAGAAGCCTTCTTCTTGAGCCTCGGGCAACTGTAAATGTCAAACCCAACCTCCAAATCATTGCTGATGATGTCAAGTGTTCCCATGGAGCTGCAATTAGTGACCTGGAAGAAAACCAACTTTTCTACTTCTTGGCGCGTGGTATTGATTTAGAGACTGCTAGAAAGGCTCTCATCTTCTCCTTTGGAGGTGAGGTTATAGAGCGTTTGCCTTATTCCTCGATCCGGAAGAAAGTAGAGACTCATATCAAAGCACTGTTGGAACCCACACTTAAAGGTTCCTCATGA 1443 47.05 MAATLLSPHLLLNPKLSIQNSASKFPTPKSRSTPKIRAAFSDPFVLQIAESLEDSLSSSSTSSPPPLQKLRDASSQTVLSTPWPSRKDEPFRFTDTSLIRYSQVTPISHPPTSIAISTDTQFPNLSIVDGHIVYSLSNLSQLPTGVFVGSLSSLPSETITKKVSEFVANFEGDLFWSLNGLGTPDMAVVYVPAGCRVEMPLHIVYYSVEGGDIGSKKLPVSNPRVFVLVEEGGEIGVIEEYVGVGENKCYWANTVTEVVIGEGAKVKHSYIQSQSLSAAHIKWTSVQQGSSSSYELIEVSTGGKLSRHNVNIQQVGPDTVTELSAFHLSVGDQTQDLHSRLVLDHPRGYSRQLHKCIVAHSLGQAVFDGNIKVNRYAQRTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEENQLFYFLARGIDLETARKALIFSFGGEVIERLPYSSIRKKVETHIKALLEPTLKGSS* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7019467 7043516 + Vvi2g651 Vvi2g651 783350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g651 480 Pfam SUF system FeS cluster assembly, SufBD 221 447 IPR000825 GO:0016226
Vvi2g651 480 PANTHER PROTEIN ABCI7, CHLOROPLASTIC 31 475 IPR011542 GO:0016226
Vvi2g651 480 Pfam SufBD protein N-terminal region 61 203 IPR045595 -
Vvi2g651 480 TIGRFAM sufD: FeS assembly protein SufD 186 463 IPR011542 GO:0016226
Vvi2g651 480 MobiDBLite consensus disorder prediction 55 86 - -
Vvi2g651 480 SUPERFAMILY Stabilizer of iron transporter SufD 58 473 IPR037284 -
Vvi2g651 480 MobiDBLite consensus disorder prediction 55 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g651 K09015 sufD; Fe-S cluster assembly protein SufD - vvi:100260803 900.582
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g651 . . . . . . . Bma14g00143 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00345 . . . Cmo02g01644 . . . . . . Cpe15g00352 . . . . . . . Cla09g01155 Cam09g1216 Cec09g1237 Cco09g1259 . . Cre09g1176 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005879 1 0 1 1 1 1 2 1 1 1 1 1 2 2 1 3 1 1 2 1 1 1 1 1 1 2 1 2 1 2 38