Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g656 ATGGGTTGCTTCCAATCCAAAACCGCCCACCTCCACTCCCCTGACGATCCCTCCTCCACCCCTGAACCCACCGCCAAGCCCGATTCAGCTAATGGAGATCAGAGTGATCAGGAGCATCAAGTTCCCGCATTTAAGGAATACGGCCTCAGCGAGCTTCGCAAGGCTACCAACGGCTTCAGCAGCGACCACATAGTCTCCGAGAGCGGCGAGAAAGCTCCCAATGTTGTTTACAGAGGGAAACTCGACAGTAATCGCTTGGTTGCTGTCAAGCGCTTCTCCAAGCTGTCTTGGCCTGATGCTCAACAGTTTGTGGCGGAGGCGGCTGGGGTTGGGAAGGTTAGGCACAAGAGATTGGTGAATCTGATTGGTTGCTGTGCTGAAGGAGATGAACGGCTTTTGGTAGCAGAATACATGCCCAATGATACTCTTTCCAAGCATCTATTCCACTGGGATAAGCAACCACTTCCATGGGACATGCGTGTGAGAGTTGCATATTATATTGCTCAGGCACTTGATCATTGTAATACAGAAAACCGGAAGATCTATCATGATTTGAATGCATATAGAGTTCTTTTTGATGAGGATGGTGACCCTCGTTTATCAAGTTTTGGCCTTATGAAAAATAGTCGAGATGGTAAAAGCTACAGTACAAACTTGGCTTATACTCCACCAGAGTTTTTGCGAACAGGGAGGGTCATTCCAGAGAGTGTGATATACAGTTATGGAACAGTTCTATTGGACCTGTTGAGTGGGAAGCATATCCCTCCAAGTCATGCACTGGACTTAATAAGGGGGAAAAATGTATTGTTGTTGATGGATTCATCATTGGAAGGACAGTATGCCAATGATGATGCTACTAAGTTGGTTGAACTTGCTTCAAAATGTCTTCAGTCTGAGGCCAGGGATCGACCTGATACTAATTTTCTTCTTACAGCAGTAGCACCCCTTCAAAAGCAGAAAGAGGTGGCATCTCATGTTCTAATGGGCCTGACTAAGACTACAGTTGTGCTGCCAACCATGCTGTCTCCTCTTGGAAAGGCTTGTGCAAGGATGGATCTTACTGCTGTACATGATATATTGCTTAAAACAGGTTATAAAGATGAAGAGGGTGCGGAGAATGAGCTTTCATTTCAAGAATGGACACAACAAGTGCAAGAGATGTTGAACACAAAGAAATTCGGGGATATTGCATTTAGGGACAAGGATTTCAAGAGTGCAATTGATTATTATTCAAAGCTAGTAGTTATGATGCCTGTACCTTCGGCTACTGTCTTTGCAAGGAGAGCCCTCTCATACTTGATGATTGGACAAGCAGAACTTGCCTTGAGGGATGCCATGCAGGCTCAGGTATGCATACCAGAGTGGCCCACTGCATTCTATCTGCAGGCTCTTGCACTCTCCAAGCTTGGAATGGAAACAGATGCTCAGGACATGCTCAACGATGGGGCAGCATTCGAGGCCAAGAGGCACAACAGCTGGCGCAACTGA 1488 46.44 MGCFQSKTAHLHSPDDPSSTPEPTAKPDSANGDQSDQEHQVPAFKEYGLSELRKATNGFSSDHIVSESGEKAPNVVYRGKLDSNRLVAVKRFSKLSWPDAQQFVAEAAGVGKVRHKRLVNLIGCCAEGDERLLVAEYMPNDTLSKHLFHWDKQPLPWDMRVRVAYYIAQALDHCNTENRKIYHDLNAYRVLFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRVIPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNVLLLMDSSLEGQYANDDATKLVELASKCLQSEARDRPDTNFLLTAVAPLQKQKEVASHVLMGLTKTTVVLPTMLSPLGKACARMDLTAVHDILLKTGYKDEEGAENELSFQEWTQQVQEMLNTKKFGDIAFRDKDFKSAIDYYSKLVVMMPVPSATVFARRALSYLMIGQAELALRDAMQAQVCIPEWPTAFYLQALALSKLGMETDAQDMLNDGAAFEAKRHNSWRN* 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7149351 7159858 - Vvi2g656 Vvi2g656 783355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g656 495 Gene3D Tetratricopeptide repeat domain 385 494 IPR011990 GO:0005515
Vvi2g656 495 MobiDBLite consensus disorder prediction 1 42 - -
Vvi2g656 495 Gene3D Phosphorylase Kinase; domain 1 33 137 - -
Vvi2g656 495 Gene3D Transferase(Phosphotransferase) domain 1 139 331 - -
Vvi2g656 495 SUPERFAMILY Protein kinase-like (PK-like) 35 312 IPR011009 -
Vvi2g656 495 SUPERFAMILY TPR-like 390 486 IPR011990 GO:0005515
Vvi2g656 495 MobiDBLite consensus disorder prediction 11 38 - -
Vvi2g656 495 Pfam Protein tyrosine and serine/threonine kinase 75 309 IPR001245 GO:0004672|GO:0006468
Vvi2g656 495 PANTHER PROTEIN KINASE, PUTATIVE-RELATED 1 494 - -
Vvi2g656 495 ProSiteProfiles Protein kinase domain profile. 62 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi2g656 495 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 1 494 IPR045845 GO:0004672|GO:0009742
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g656 K14500 BSK; BR-signaling kinase [EC:2.7.11.1] - vvi:100264404 989.949
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g656 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010020 0 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76546 PF07714 PK_Tyr_Ser-Thr 2.10E-26 CL0016 Vvi PK