Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g659 ATGCAAGTGGCCGCCCTTCGATCCATGAAGATCACGGAGCATGATCAGATGCCTGATCTCACTTCCCAGAACGGTCCTTTAACTTTTGATACGGTGAAGACTCCTTTTGAACTTCAATCTAGTGATTCCACTCTGGGAAATCAGAGGATAATGTCGAATCCTCGACGGAAAACGAAGATAGTATGTACTATTGGTCCCTCCACTAGTTCACGAGAAATGATATGGAAACTGGCAGAAACTGGAATGAATGTTGCACGTTTGAATATGTCACATGGGGACCATGCATCGCACAAGAAAACCATTGATCTGGTCAAAGAATACAATGCTCAATTTGAAGACAAGGTTATAGCCATAATGCTGGACACCAAGGGTCCTGAGGTCAGAAGTGGAGATGTCCCTAAACCAATCATGCTTAAGGAGGGACAAGAATTCAACTTCACTATTAAAAGAGGAGTCAGCTCAGAAAACACTGTCAGTGTAAATTATGATGACTTTGTGAATGACGTGGAGGTTGGAGATATACTTCTTGTTGATGGTGGAATGATGTCATTAGTTGTGAAATCAAAGTCTAAGGATTTGGTTAAGTGCCAAGTAATTGATGGTGGTGAGCTGAAATCAAGGCGTCACTTGAATGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATAACAGACAAAGACTGGGAAGATATCAAGTTTGGAGTGGACAACCAAGTTGATTTCTATGCTGTTTCCTTTGTGAAAGATGCTGAAGTGGTCCATGAGTTGAAAGATTACCTCAGAAGCTGTGGTGCAGATATTCATGTGATTGTGAAAATTGAAAGTGCAGATTCCATACCAAATCTTCATTCCATTATTTCTGCTTCTGATGGGGCAATGGTTGCACGTGGGGATCTTGGAGCTGAACTTCCAATTGAGGAAGTCCCTTTATTGCAGGAGGACATCATTAGAAGGTGTCACAGCATGCAGAAGCCTGTTATTGTAGCAACAAACATGTTGGAGAGCATGATTAATCATCCTACACCAACAAGGGCCGAAGTTTCTGATATTGCAATTGCTGTAAGAGAAGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCCCATGGAAAGTATCCGTTGAAAGCTGTTAAAGTAATGCATACTGTGGCATTGAGGACTGAGTCTAGTCTATCAACCAGCACAACTCCTCCAAGTCAAACTATACCCTACAAGAGTCATATGGGTACAATGTTTGCTTTCCATGCCACCACTATGGCTAACACTCTTAATACTCCCATCATTGTCTTTACAAGAACTGGATCCATGGCTATAACTTTAAGCCATTATCGGCCTTCCTCAACAATCTTTGCCTTCACTAATGAAGAAAGAGTTAAGCAGAGGTTGGTGCTTTATCATGGTGTGATGCCTATATTTATGCAGTTTTCAGATGATGCTGAGGAGACCTTCTCTCGAGCCCTCAGCATACTAGTGAACAAGGGCCTAATGAAGGAGGGAGAGCATGTGACTCTTGTTCAAAGTGGAGCACAACCAATCTGGCGTGTTGAATCTACTCACCACATCCAAGTTCGTAAGGTCCAAGGTTGA 1584 42.55 MQVAALRSMKITEHDQMPDLTSQNGPLTFDTVKTPFELQSSDSTLGNQRIMSNPRRKTKIVCTIGPSTSSREMIWKLAETGMNVARLNMSHGDHASHKKTIDLVKEYNAQFEDKVIAIMLDTKGPEVRSGDVPKPIMLKEGQEFNFTIKRGVSSENTVSVNYDDFVNDVEVGDILLVDGGMMSLVVKSKSKDLVKCQVIDGGELKSRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAEVVHELKDYLRSCGADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEEVPLLQEDIIRRCHSMQKPVIVATNMLESMINHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKYPLKAVKVMHTVALRTESSLSTSTTPPSQTIPYKSHMGTMFAFHATTMANTLNTPIIVFTRTGSMAITLSHYRPSSTIFAFTNEERVKQRLVLYHGVMPIFMQFSDDAEETFSRALSILVNKGLMKEGEHVTLVQSGAQPIWRVESTHHIQVRKVQG* 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7190723 7217114 - Vvi2g659 Vvi2g659 783358

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g659 527 ProSitePatterns Pyruvate kinase active site signature. 266 278 IPR018209 GO:0004743|GO:0006096
Vvi2g659 527 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 54 389 IPR015813 GO:0003824
Vvi2g659 527 TIGRFAM pyruv_kin: pyruvate kinase 56 525 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi2g659 527 SUPERFAMILY PK C-terminal domain-like 374 525 IPR036918 -
Vvi2g659 527 Pfam Pyruvate kinase, barrel domain 56 392 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi2g659 527 Gene3D - 125 220 IPR015806 GO:0004743|GO:0006096
Vvi2g659 527 Gene3D - 56 386 IPR040442 -
Vvi2g659 527 PRINTS Pyruvate kinase family signature 114 130 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi2g659 527 PRINTS Pyruvate kinase family signature 238 252 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi2g659 527 PRINTS Pyruvate kinase family signature 268 294 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi2g659 527 PRINTS Pyruvate kinase family signature 295 319 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi2g659 527 PRINTS Pyruvate kinase family signature 320 344 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi2g659 527 PRINTS Pyruvate kinase family signature 345 363 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi2g659 527 PRINTS Pyruvate kinase family signature 364 380 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi2g659 527 PANTHER PLASTIDIAL PYRUVATE KINASE 3, CHLOROPLASTIC 3 525 - -
Vvi2g659 527 Pfam Pyruvate kinase, alpha/beta domain 415 505 IPR015795 -
Vvi2g659 527 SUPERFAMILY PK beta-barrel domain-like 125 216 IPR011037 -
Vvi2g659 527 PANTHER PYRUVATE KINASE 3 525 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi2g659 527 Gene3D - 387 505 IPR036918 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g659 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - vvi:100257566 1022.31
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g659 . Blo03g00059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00775 . . . . . . . Cmo19g00460 . . . . . Cpe15g00346 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72