Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g661 ATGATTATTATGGAAATAGCTCCTCTTATTTTCATTTTTGAATTTGGTTTTCTTCATTATCTATTAGATTTCTCCCCATATCTAAACGAGGAGGAAATTAAATTGCATGAGACATTTGAATCAGTAAATATATGGGGCGTTAAAGCCAATGTAAGAGATTGTCCTTACATGGAGAAGATAGCTAGTTGTGTGGGCAAGTTAATTTTTATATGTAAGTCACAAGAAGATGATGATTCATGGGAGGTAAGAGCCTTTGCAGAAGACACTGGCAATATCATGGGCACCACTTGGCCACCTAGGTCATACACTTGCACTTTCTGTAGAAGGGAATTCCGTTCTGCCCAAGCCCTAGGAGGTCACATGAATGTGCACCGCCGCGACCGAGCGAGGCTCCACCAAACCCACCCGGGTTCAAACAACCCCACTTCATCATCCTCCACTAACTCATCATCCACCCTCATAATCCCAACCCAAGAATTCATCACAAATGGTGGGCTATGCCTTCTCTACCAGCTACCACCTAACCCTAATGCCCTCTTCACCCCTACTTCCATAAATTCATGCATCGCTCTCTGTCCCTCCAGCAAACCCGAGCCGTCTGCAGTGTCCAATGGCGACGACGATAATGAGAATACCAGCAACAATTACAACGACTCAGCCATGGAGGAGCTTGATCTAGAGCTCCGACTAGGACACAGACCCTCGCCGTCATAA 714 45.38 MIIMEIAPLIFIFEFGFLHYLLDFSPYLNEEEIKLHETFESVNIWGVKANVRDCPYMEKIASCVGKLIFICKSQEDDDSWEVRAFAEDTGNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQTHPGSNNPTSSSSTNSSSTLIIPTQEFITNGGLCLLYQLPPNPNALFTPTSINSCIALCPSSKPEPSAVSNGDDDNENTSNNYNDSAMEELDLELRLGHRPSPS* 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7241429 7242900 + Vvi2g661 Vvi2g661 783360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g661 237 MobiDBLite consensus disorder prediction 196 220 - -
Vvi2g661 237 MobiDBLite consensus disorder prediction 134 151 - -
Vvi2g661 237 SMART c2h2final6 102 124 IPR013087 -
Vvi2g661 237 MobiDBLite consensus disorder prediction 196 237 - -
Vvi2g661 237 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Vvi2g661 237 Gene3D Classic Zinc Finger 93 154 - -
Vvi2g661 237 MobiDBLite consensus disorder prediction 132 151 - -
Vvi2g661 237 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Vvi2g661 237 PANTHER ZINC FINGER C2H2-TYPE/INTEGRASE DNA-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 71 191 - -
Vvi2g661 237 PANTHER OS07G0101800 PROTEIN 71 191 - -
Vvi2g661 237 Pfam C2H2-type zinc finger 102 126 - -
Vvi2g661 237 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g661 - - - vvi:100267849 323.939
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g661 . . . Bda08g00626 Bpe05g00532 . Bma07g00945 . Cmo06g00876 . Cma02g01606 . Car02g01366 . . . Cpe05g00184 . . . . . . . Cla10g00172 Cam10g0171 Cec10g0180 Cco10g0180 Clacu10g0175 Cmu10g1023 Cre10g0429 . . . . . . . Cme06g02480 . . . Bda09g00708 Bpe08g00846 . Bma05g00715 . . Cmo02g01650 . Cma06g00849 . . . . . . . . . . . . . . . . . . . . Csa03g04620 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007423 2 1 1 5 3 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14604 PF13912 zf-C2H2_6 5.00E-06 CL0361 Vvi TF