Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g662 ATGCACATGGATGTCGTCACGGCCAACCCTAACGATTGGGATTTTGATCCTTTCACACTGAGCATTGATGGGGATAAACTTCGTGGCCGTGGAACTACTGATTGTTTAGGGCATGTTGCACTTATAACTGAACTCATGAGAAGGCTAGGAGAGACCAAGCCAAAACTGAAGTCTACTGTGGTTGCTGTCTTCATAGCCAATGAAGAAAACTCGGCTATTTCAGGGGTTGGTGTGGATGCTCTGGTAAAAGATGGATTGCTGAATAAGCTAAAGGAAGGTCCTCTGTATTGGATTGACACAGCAGATAAACAACCCTGCATTGGTACTGGGGGTATGATCCCATGGAAACTTAGAGTGACTGGGAAGCTTTTTCATAGCGGTCTACCACACAAGGCTATAAATCCATTGGAGCTAGCCATGGATGCAGTTAAAGAAATCCAGCTGCGTTTCTATAGAGATTTCCCTCCCCATCCAAAGGAGCAAATCTATGGGTTTGCGACACCATCAACCATGAAGCCAACTCAATGGCATTATCCAGGAGGCGGGATCAATCAAATTCCAGCTGAGTGTACGATTTCAGGAGATGTCAGGTTAACTCCGTTTTACAATGTGATAGATGTAATGAAGAAGTTACAAGAATATGTAGACGACATAAATAACCACATCGAGAGGCTAGAATCACGGGGCCCAGTTTCGAAATATGTCCTACCAGATGAAGACCTAAGGGGAAGCCTTACAATAAGTTTTGATGAGGCAATGTCTGGAGTTGCTTGTGATCTTAAATCTCATGGCTTCCATGTACTATCGAAGGCAACTGAGGAGGTGGTTGGGTATGTGAAGCCTTACTCAATCACTGGTAGTTTGCCGCTCATTCGTGAACTGCAGGATGAAGGCTTTGATGTTCAAACCTCAGGCTATGGTTTAATGGCGACATACCATGCCAAGAATGAATACTGCCTTCTTTCTGATATGTGCCAAGGCTACCAAGTGTTTGTCAGCATCATTTCCCAGTTGGAAGATTGA 1023 44.38 MHMDVVTANPNDWDFDPFTLSIDGDKLRGRGTTDCLGHVALITELMRRLGETKPKLKSTVVAVFIANEENSAISGVGVDALVKDGLLNKLKEGPLYWIDTADKQPCIGTGGMIPWKLRVTGKLFHSGLPHKAINPLELAMDAVKEIQLRFYRDFPPHPKEQIYGFATPSTMKPTQWHYPGGGINQIPAECTISGDVRLTPFYNVIDVMKKLQEYVDDINNHIERLESRGPVSKYVLPDEDLRGSLTISFDEAMSGVACDLKSHGFHVLSKATEEVVGYVKPYSITGSLPLIRELQDEGFDVQTSGYGLMATYHAKNEYCLLSDMCQGYQVFVSIISQLED* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7296722 7304697 + Vvi2g662 Vvi2g662 783361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g662 340 Pfam Peptidase dimerisation domain 107 219 IPR011650 -
Vvi2g662 340 SUPERFAMILY Bacterial exopeptidase dimerisation domain 111 219 IPR036264 -
Vvi2g662 340 PANTHER ACETYLORNITHINE DEACETYLASE 1 340 - -
Vvi2g662 340 Coils Coil 208 228 - -
Vvi2g662 340 Gene3D Zn peptidases 1 103 - -
Vvi2g662 340 Gene3D - 111 226 - -
Vvi2g662 340 Pfam Peptidase family M20/M25/M40 2 336 IPR002933 GO:0016787
Vvi2g662 340 PANTHER - 1 340 - -
Vvi2g662 340 SUPERFAMILY Zn-dependent exopeptidases 2 338 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g662 K01438 argE; acetylornithine deacetylase [EC:3.5.1.16] - vvi:100252374 699.893
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g662 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0458 . . . . . . . . . . . . . Bma12g00203 . . . . . . . . . . . . . . . . Cla09g01145 Cam09g1204 Cec09g1218 Cco09g1245 . . Cre09g1165 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001796 0 4 1 1 1 3 2 2 2 3 2 2 1 3 3 2 2 1 3 2 2 1 2 4 4 3 3 2 5 1 67