Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g665 ATGAGCACTGCACGTGCCACCTGTCCGTTGCTTGTTCCATCCGCAGCGTTAAATAAGGGGTGTACTAGCGCACATCCAGCACGTATCAATCGTACCTTTCCTAGTCTACACTTATGTACAATGGCGAAGCACAAGTTTCGAACTCTGGAAGAGCTGTATGGTGTCAGTGAAGAGGTTTCGCAACCCAAGATCACACCAGTCCTGAAAGGGGGTTATCGGATACAGGGGCCAGCAGATGATGCAGAATCTGTAATTCAGTTGACCATGGGATCATGTGGTACTGAAAAAGGATTTAGTGGGCATTTCTCAAGTGGGAAACTTTATACAAGAGCAGAATCTGAGATATGCAACGTGTGTGCTACCCTGTGCTCATCTTGCATGCATTTTGACCGCGTGGCATCACTAGTGGGAAAAATGACTGAGTTTTCAGATGAAGGCTGTCAGGAAAAGATAGCTAGTCGGTGCTTTTTCAATGATGCGGAGTTGCTATCTCCTTGCAAGAGCAATGCCAGTGATGACCAGCAGCATACAAGTAGCGAAACAAGTAATCTTCTCAGCGGGTGCTCAAGTCATGAGTCATTCTCTGAAAATGCTGAAAGTAAGGTTATTTTGAGGGCTTCTCATACTTCTGAAGACATTGAGATGGGTCAACCTCTTGCAGAAGATAGTGGTCTTCCAAATCCATCAACATTTCATGGTAATATAGTCTTCTCAAATCAGCACAAAAATCAGAATGATTTAGAATGCCCTGGTGATGATATCTCATGCATTAGTAGGGCTGATGGCCCAGTTGGTGATCATAATGGGGAAGGAGACAGGAAGAATGTATCATACAGTTCTGCTTCAGTTAATAGCTCTCCTATAGCTGTAGCTACCGTCAATGTTGAACCAACTTCACATTGTCTGGTTAGTAGTCATTGTGGAGAAGAATTGGAACACAAATCTGAATTTACTAAAGAATCTATGAGGAAAACTGCTGGCTTATCAAACAAATTGGACCCATCAGAGATTTCTTACTTAAGAGGTGTTTATGCTGGTCCAAGTCCAACATCACGGAAGGGAGAACCTTCTGAATGCTCTGGAAAACAAGTTGAATCATCATCGGCAAGAGTGGCAGTGGCAACCTCTAGCTTTGGTGGTCAAATGCCAGGTATTCCCAACTGTGCTAGATCTGTGAAATCTGATATTGATTTGGATGATGGGCACCAAGAAACTGAAGCTGTACACTTTTCGGACAAAAAGGAACATTCTGAGAAGTCTTGTGCATTGCTTGAGACATCAAGCGCACAGAAAGGTCCTTTGCAATCTCAGCTTGTTGATGATAATGTTAAATCAGATGTTTTGGAATATGAAGTAAAAGTTTGTGATATATGTGGGGATGCAGGTCTGGAGGAACTGCTTGCTACTTGTACCAAGTGCAGTGATGGGGCAGAGCACATTTACTGCATGCGCATAAAGCTGGAGAAAGTTCCTGGACGGGGTTGGATTACTTCTAAATTTGAGAATTTCTTGGAATTTGAGAGTATGGATTCAACTGTTTCCAGAAGCAGAACAAAAAGCCTTGATTCTGCACCCCAATTCTCTGCTAAGAGACCTGCCGACAGTCTAGAAACTGTCCCAGTTACGAAAAAGAGGACTCTTGAAACCATTACCAGACCAACTAAGGTGCCCAGCCCCCACAAAAAAGATATATTATCATGGGATTCTTCATTCAGGAACTTGTGTAAGGGGAAAGTGAAGCAAGCCCATGAAACATCTTTTGGTGATAATTCTTCTAATAATACTCTGCAAAGTGCATGCTTACCTACTGTGTCAGATTATAAGTCACAAAAAATTCCACAACAGCTACAAATGTCACGGGGTTCTCTTCTTAAATCAAATTCATTCCACATTTTAGACGCAAATCTGAAAGTTAAACTGTCTGAGAAAGCTGTTCTTCAGAAGCAAAAATTTACCAGAGAAACTGATACCAGTGACATGAAAAAGGGGATTGGCAGAATGATGAGTAAATCCTTGTCATTTAATGGTGTTGGCTCAAAACATTTGAATGTTGCTCAATCAAAAGTTAAAATGTTCTCTTCTAATTTTTCTCATGTTGAGGATTTGAAGAGATTACGACATGCAAAACAGAACTCACTTCAAAGGGATCATAAATCCAAATCATATAACCCTCACATGATTTCACCAGTGGCTGGCTCTGGTGATTCTGCACCAACAACTGACAAAAAAACAGCTTCTCGTGGTGAAACTGTATTAGCCCATTCTTCTGGGATCACTTGCAATGAGTTGAGGTCTATGCAGTTTCATAGAAATTCTAATAATTCTTCAGAACCGACCAGTCGGCTTGCTCCTAAAGACTTAAAATGTTCCCATGGCCAAGGAGTTAGTGGAGCAAAGAGGTCAGCTTTGTGTTTATCTGATGTGGATAAAGATCCATCTCCCAGAATGTCTGATTCTTCTCATGAACCCAAGGTGAACCGAGATCAATCATCTCAAACGGGAAAATCCTCTAATCAGGAAGAACAATCCAGGGTTATCTGTTCTTTCAGCCAGCCCAGGCTGAAAATCTCAGTTGGAAGTAGAAGTGCACACTGCCACAGATGCAAAGGAATAGGCCATTCTAGAGAATCTTGCCCAACCATGAGTTCTCAGGTTCCTATTCTTGATGCTGGAAATTCAAAAGAAGTGAACAAAAGTAGTAAGATGGGAGATGTGGCCAAAGCTGCTATTGTTGGAAAAGATGAATTACACAAAAGGTCCAGATGTCCCAATCAATCTGATGAATTATCTATGTCCAGTTCCAATGTGAACAGCAAAGTTTCTTCAAGCGATTACCTGTCAAGGCATTCAAGTTGGTTAGTGAATCTGTTGTCTGCTGATGAAACCAATGAACAACAAATTAGAGTTGCTAAGGATGTGAGATGGCATGTTGAGCACAATACACAAGCAGCAAATATGATCAAAGTGGAGAACTCAAATTCCGTTGTTCCTTCTGATGAAAGGTTGTATGTGAGAGATGTGCCAAGGCTTGCTTCTACGGTGTCCTTTCCTTCTCGGATTTCTGCTGTTCCAGAGCTTGATTACATATGGCAAGGAGGATTTGAAGTGCATAGAATTGGAAGGCTTTCAAGTCATTATACTGGGATTCAAGCACATTTATCGACTTGTGCATCACCAAAAGTTCTTGAAGTGGTGCACATGCTTCCTCCAAAAATCATTTTGGAGGAAGTACCTCGCTTGAGTACTTGGCCAGCTCAGTTCATGGAAAATTATGCCACTGAAGATAACATTGCTCTCTACTTCTTTGCAGCAGATCTTGAGAGCTATGGGAGAAACTACAAGAGCTTGCTGGAATGGATGATTAAGAATGATTTAGCCCTCAAAGGAAATCTCAAGGGAATAGAACTTCTGATATTTTCATCCAAACTGCTTCCTGAAAAATCCCAGCGTTGGAATGCATTATCATTTTTATGGGGTGTATTCAGAGTAAGGAGGGTAAATAACTCAGAACATGTCCCTACTTCTCATATACAGGTTTCTGTTCCCTGCTTGAATATATTACCCTCAGACCAAGATTTGTCTATTACTACCTCTGGGCAGTTGTTTGAAAGTCGATCTGCAACTAACGTAGCCCCACAGGAATTACGACGCATCAATTCTGGAAGGACAAGTTTTGATCAGAAACCAAGTAGAGTCAATACCATTTCATGTTCTAGTGCTCCTATAGGAGAGCAGTTCTCCAATGATATGCTACAGACTAACATCTCCCTGAATGAACATAGAGGTTGTGAGGGAAGAGTGGAGGTGGATCCCAAACTGTGTCTTCAGGCAAGGGGAGAACATAGGAGTGAAGGCATGAAAGTTGAGGAAAAAACTGAATGTGAGAGGGCTCAGAGTGACTTCTGTGGAATGTATGAGTACAATACTGCTAGAGACGCAAAGTATTCGGGTAATGGATATCCATCTGGGGTGAATGATCCTCATTGTAGTTTCCCTGTTGAGGATCAAAGATGTCAGGGAGCTCATAACATTGAGATTTCTGAGAAATTAAAGATGACGGGGGGATCTGCATTTTCTGCATCAGGTTCAGTAGACCTTGGTTTGGGAGTCAAGTTCAGTCAGCAGCAAGTACCCTCAATAGATGGAGAAGACCAGGCAAAATCTGGGTATCCAAATCTTGAGCTTTCTTTAGGGGCTGAAAAGAAACCAACAAAACAAGAAATGGCGCCTTCATTTCTTGGGATTGTGAACAAGAAAAGTAATCAAGATAAGCATCAAAATCCAGAGTCAAACAGGAAAAGTAGTGATGAAGAACTATCCCTTTCTCTTTCTCTTGGTTTATCTTTCCCTGACAGAACTAATGCCAGAGCCTGA 4374 41.7 MSTARATCPLLVPSAALNKGCTSAHPARINRTFPSLHLCTMAKHKFRTLEELYGVSEEVSQPKITPVLKGGYRIQGPADDAESVIQLTMGSCGTEKGFSGHFSSGKLYTRAESEICNVCATLCSSCMHFDRVASLVGKMTEFSDEGCQEKIASRCFFNDAELLSPCKSNASDDQQHTSSETSNLLSGCSSHESFSENAESKVILRASHTSEDIEMGQPLAEDSGLPNPSTFHGNIVFSNQHKNQNDLECPGDDISCISRADGPVGDHNGEGDRKNVSYSSASVNSSPIAVATVNVEPTSHCLVSSHCGEELEHKSEFTKESMRKTAGLSNKLDPSEISYLRGVYAGPSPTSRKGEPSECSGKQVESSSARVAVATSSFGGQMPGIPNCARSVKSDIDLDDGHQETEAVHFSDKKEHSEKSCALLETSSAQKGPLQSQLVDDNVKSDVLEYEVKVCDICGDAGLEELLATCTKCSDGAEHIYCMRIKLEKVPGRGWITSKFENFLEFESMDSTVSRSRTKSLDSAPQFSAKRPADSLETVPVTKKRTLETITRPTKVPSPHKKDILSWDSSFRNLCKGKVKQAHETSFGDNSSNNTLQSACLPTVSDYKSQKIPQQLQMSRGSLLKSNSFHILDANLKVKLSEKAVLQKQKFTRETDTSDMKKGIGRMMSKSLSFNGVGSKHLNVAQSKVKMFSSNFSHVEDLKRLRHAKQNSLQRDHKSKSYNPHMISPVAGSGDSAPTTDKKTASRGETVLAHSSGITCNELRSMQFHRNSNNSSEPTSRLAPKDLKCSHGQGVSGAKRSALCLSDVDKDPSPRMSDSSHEPKVNRDQSSQTGKSSNQEEQSRVICSFSQPRLKISVGSRSAHCHRCKGIGHSRESCPTMSSQVPILDAGNSKEVNKSSKMGDVAKAAIVGKDELHKRSRCPNQSDELSMSSSNVNSKVSSSDYLSRHSSWLVNLLSADETNEQQIRVAKDVRWHVEHNTQAANMIKVENSNSVVPSDERLYVRDVPRLASTVSFPSRISAVPELDYIWQGGFEVHRIGRLSSHYTGIQAHLSTCASPKVLEVVHMLPPKIILEEVPRLSTWPAQFMENYATEDNIALYFFAADLESYGRNYKSLLEWMIKNDLALKGNLKGIELLIFSSKLLPEKSQRWNALSFLWGVFRVRRVNNSEHVPTSHIQVSVPCLNILPSDQDLSITTSGQLFESRSATNVAPQELRRINSGRTSFDQKPSRVNTISCSSAPIGEQFSNDMLQTNISLNEHRGCEGRVEVDPKLCLQARGEHRSEGMKVEEKTECERAQSDFCGMYEYNTARDAKYSGNGYPSGVNDPHCSFPVEDQRCQGAHNIEISEKLKMTGGSAFSASGSVDLGLGVKFSQQQVPSIDGEDQAKSGYPNLELSLGAEKKPTKQEMAPSFLGIVNKKSNQDKHQNPESNRKSSDEELSLSLSLGLSFPDRTNARA* 1458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7322916 7339488 + Vvi2g665 Vvi2g665 783364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g665 1457 MobiDBLite consensus disorder prediction 708 722 - -
Vvi2g665 1457 MobiDBLite consensus disorder prediction 344 366 - -
Vvi2g665 1457 MobiDBLite consensus disorder prediction 169 191 - -
Vvi2g665 1457 PANTHER - 506 1456 - -
Vvi2g665 1457 PANTHER - 96 496 - -
Vvi2g665 1457 MobiDBLite consensus disorder prediction 826 846 - -
Vvi2g665 1457 MobiDBLite consensus disorder prediction 708 756 - -
Vvi2g665 1457 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 386 506 IPR013083 -
Vvi2g665 1457 SUPERFAMILY FYVE/PHD zinc finger 450 496 IPR011011 -
Vvi2g665 1457 MobiDBLite consensus disorder prediction 733 756 - -
Vvi2g665 1457 PANTHER - 506 1456 - -
Vvi2g665 1457 PANTHER - 96 496 - -
Vvi2g665 1457 MobiDBLite consensus disorder prediction 1397 1457 - -
Vvi2g665 1457 MobiDBLite consensus disorder prediction 769 846 - -
Vvi2g665 1457 MobiDBLite consensus disorder prediction 1422 1436 - -
Vvi2g665 1457 MobiDBLite consensus disorder prediction 811 825 - -
Vvi2g665 1457 MobiDBLite consensus disorder prediction 1437 1457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g665 - - - vvi:100243800 2757.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g665 Vvi16g79 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g665 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004091 1 5 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 2 44