Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g679 ATGTCGATCAACACCCTATCCTTCTTGTCTTTGCTTGGCTTTCCATCTAAGCCCCCTCTGCCTCCTTTTCCGCCCCAACTTGTCCCTTCAAGAAACCTCTCTCTCCATCACCACAACCCTCTCCTGCCCTTGCTCTTCTTGCCTTCCAAGGAGAGAAGAGAAAATCAGGACATAAACGAGGAATTGGAGGACAATCACAATCCGGCACTCCATGAGCCATGGCATGTTGCTACCACTGGCTTGGACGAGGCTCTGATCAAGTCCATCACTCTCTGTAAGTACAAGAAGGGAGATGGGTTGGTTGAAGGGACAGATTGCTCGGTTTGTCTCAGTGAGTTTGAAGAAGAAGAGAGCTTAAGGCTCTTGCCCAAGTGCAGTCATGCTTTCCATGTCCAGTGCATTGATACATGGCTTAAATCTCACTCCAATTGCCCTCTGTGTCGAGCTAATATTGTTCCTACTACTGTTTCACCGACTCAACTCCCTCCACCAGTGATGGAAAGTCCACTAAATAATGAACCTTCGCAGCAAAGCCAACTTGAGCATGAAAATGTAGCTGTAGGAGAAGATTTGGAAAGGATTAGAGATGAAGGAGAGCAACAGATACGGAGATCAATTTCCTTGGATTATTCATGTCAGACCCGTCTTTCAGTAGCCGACATTTTGCTCATGAACGAAGATGAAGATCCTCAGATGGGTGATTGCGATTGCCAGTTTCCAGGTCATGTTGGATCATCAAAAGTAGCAGTAGGAGAAATCAGCAAGTACAGCCATAGAAACAGGGTGTTGCACTGTGTGATGAGTCCTGTCTCAATGAAGAGATCATTCTCAAGCGGGAGATTGTTATCATATGCTTTGGCTTCAATTTCTTATATAAGAAGTTCCCAATTCTTAAATCTCTTTTTTCCATTCTAG 915 45.03 MSINTLSFLSLLGFPSKPPLPPFPPQLVPSRNLSLHHHNPLLPLLFLPSKERRENQDINEELEDNHNPALHEPWHVATTGLDEALIKSITLCKYKKGDGLVEGTDCSVCLSEFEEEESLRLLPKCSHAFHVQCIDTWLKSHSNCPLCRANIVPTTVSPTQLPPPVMESPLNNEPSQQSQLEHENVAVGEDLERIRDEGEQQIRRSISLDYSCQTRLSVADILLMNEDEDPQMGDCDCQFPGHVGSSKVAVGEISKYSHRNRVLHCVMSPVSMKRSFSSGRLLSYALASISYIRSSQFLNLFFPF* 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7633297 7635209 + Vvi2g679 Vvi2g679 783378

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g679 304 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 49 287 IPR044675 -
Vvi2g679 304 SUPERFAMILY RING/U-box 100 154 - -
Vvi2g679 304 Pfam Ring finger domain 105 148 IPR001841 -
Vvi2g679 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 154 IPR013083 -
Vvi2g679 304 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Vvi2g679 304 SMART ring_2 106 147 IPR001841 -
Vvi2g679 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 49 287 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g679 - - - vvi:100243705 449.514
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68