Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g68 ATGAATGGAAAAAAGGGTAGTTATGAGATCAACATTCCATCAACTACCAAGGCTAAACAGCCTGAGAGCCGGAAGAAATCTGGTGGCGGCGGCGGCGGTGGAGGCTTCTCCTTCAAAGGTTGGATGTGGAGTGTGTGGGAATTTGGAAAAGAAGATAGCAACAGAGTAAAATTCTCACTAAAGGTGGGGCTTGCTGTCCTACTTGTGTCTTTGCTTATACTATTCCGGGCACCCTATGATGTGTTTGGCACCAACATCATCTGGTCCATCCTCACTGTTGCCATCATGTTCGAATATACAGTTGGGGCGACGTTTAACAGGGGATTCAACAGAGCGCTTGGAAGCGTGCTTGCAGGAATCTTTGCCATTGCTATTGCTCAGCTAGCTCTAAGTGCAGGCAGGGTTGCTGAGCCTTTTATCATTGGTGTGAGCATCTTCCTAATTGGGGCTATTACATCATTCATGAAGTTATGGCCATCTCTTGTGCAGTATGAGTATGGGTTCAGGGTCATACTTTTCACCTACTGTCTGATCATAGTCTCGGGATATCGGATGGGGAACCCGTTTAGGACTGCCATGGATAGGCTGTACTCAATTGCCCTTGGAGGGATTGTAGCAGTCCTGGTGAATGTGCTTGTTTTTCCTATATGGGCTGGGGAGCAGTTGCACAAGGAGCTGGTCAAAAGCTTTGATTCAGTGGCCGATTCACTTGAAGAATGCGTTAGAAAATACTTGGAAGATGATGGCTCAGATCATCCAGAGTTCTCCAAGACTGTCATGGACGAGTTTCCAGATGAGCCTGCATACCGGACATGCCGAAAAACATTGAACTCCTCTGCAAAACTAGAATCCTTGGCAAATTCAGCAAAATGGGAGCCACCACATGGGAAATTCAGGCACTTCTTCTATCCATGGTCAGAGTATGTCAAAGTTGGAGCAGTTTTAAGATATTGTGCATATGAGGTTATGGCACTGCATGGTGTTCTTCACTCTGAGATTCAGGCCCCATACAACCTTCGGCTCACATTCCAATCAGAAATCAAAGAAGCAACAAGCCAGGCTGCAGAGCTGGTGAGGTGCTTGGGAAAAGACGTGTCGAGCATGAAGCAAAGCATCAAGACTTCCCTACTGAAGAAGGTTCACAGCTCCACTGAGCGTCTCCAATATGCCATAGACCTCCATTCCTATCTCCTCACATGCCATTCCGACCCTCCTGACACCTCTTCCAAGCCTCTTTCCAAGCTCCTCTCCCATGCCATGATGAGGAAACAGATGAGAAGGCTTCATTCATGGCCATCCAGAGAGGTGGACGCCTTTGAAGAAGACGGTGGCCTCTGTATGGACACCCTGCCGAGGATGAGGGCACTGGAGAGCACTGCAGCATTGTCCCTTGCCACCTTCACTTCCTTGCTGATAGAGTTCGTGGCTCGCCTTGATCACTTGGTTGAAGCAGTTGACCAGCTTGCAGTGATGGCCAAGTTTAACCATGAGAGCCTATAA 1500 48.13 MNGKKGSYEINIPSTTKAKQPESRKKSGGGGGGGGFSFKGWMWSVWEFGKEDSNRVKFSLKVGLAVLLVSLLILFRAPYDVFGTNIIWSILTVAIMFEYTVGATFNRGFNRALGSVLAGIFAIAIAQLALSAGRVAEPFIIGVSIFLIGAITSFMKLWPSLVQYEYGFRVILFTYCLIIVSGYRMGNPFRTAMDRLYSIALGGIVAVLVNVLVFPIWAGEQLHKELVKSFDSVADSLEECVRKYLEDDGSDHPEFSKTVMDEFPDEPAYRTCRKTLNSSAKLESLANSAKWEPPHGKFRHFFYPWSEYVKVGAVLRYCAYEVMALHGVLHSEIQAPYNLRLTFQSEIKEATSQAAELVRCLGKDVSSMKQSIKTSLLKKVHSSTERLQYAIDLHSYLLTCHSDPPDTSSKPLSKLLSHAMMRKQMRRLHSWPSREVDAFEEDGGLCMDTLPRMRALESTAALSLATFTSLLIEFVARLDHLVEAVDQLAVMAKFNHESL* 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 753240 756161 + Vvi2g68 Vvi2g68 782767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g68 499 PANTHER OS01G0221600 PROTEIN 1 497 - -
Vvi2g68 499 Coils Coil 496 499 - -
Vvi2g68 499 Pfam Aluminium activated malate transporter 46 489 IPR020966 GO:0015743
Vvi2g68 499 MobiDBLite consensus disorder prediction 1 33 - -
Vvi2g68 499 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 1 497 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g68 K25841 ALMT; aluminum-activated malate transporter family protein - vvi:100243329 944.495
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g68 . . . . . . . . . . Cma02g01415 . Car02g01185 . . . Cpe05g00367 . . . . . . . . . . . . . . . . Cone6ag0822 Cone9ag0822 . Csa05g00228 Chy09g01272 . . Blo19g00352 . . . . . . . Cmo02g01444 . . . . . . . Bhi12g00172 . . . . . . Cla01g00211 Cam01g0216 Cec01g0210 Cco01g0214 Clacu01g0211 Cmu01g0205 Cre09g2302 Lsi09g00199 . . Cme09g01815
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012902 0 2 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28