Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g684 ATGGATAACGGCCGGGAAGCTGGGTTTTCAGGGAGTGTTGGTGGTGGTGTTGATAATTGGATTCCGGGGTCTAGTGATCAATTAGTATGGGCAACTGAGGATGATTATGCAGTTTGGAATGGGGATGGATCGGGTGACACTCCCTCCAACTCGAATTATGAGGGAAGGCAATCTCAAAGCAATGTGTTTGGTCGGGACAGGGATTTGCCTTCTAACCGATCAAAAGCAATTGGGAAAATGTTCTTTAAGACCAAGCTCTGTTGTAAATTCCGTGCTGGGACTTGCCCATATGTGACCAATTGCAATTTTGCTCATAGCATTCAAGAGCTTAGAAGACCGCCTCCAAATTGGCAAGAAATTGTGGCAGCACATGACGAAGAACGAGGCGTGTCCTCGGAGCCAAGGGAGGAGTTTCAAATTCCATCAATTGGATCCTCTAGTTTTGGTGTGGAGACTCAAAGGTCTTACAAGGGGCGTCATTGTAAGAAGTTCTACACTGATGAGGGGTGCCCATATGGAGATAACTGCACTTTTCTTCATGATGAGCAGTCAAAGGCTCGGGAGAGTGTGGCTATAAGTTTGGGCCCCGGTGCAGGTGGTGGTGGATCAAATATCAAGCCTTCCAATTGGAAAACCAGGATTTGTAATAAGTGGGAGCTTACAGGGTATTGCCCGTTTGGGAGCAAGTGCCATTTTGCTCATGGAATGGGAGAACTACACCGTTATGGTGGGGGCCTCGTGGATGAATCTAGAGATTCTACTTCTGCACCTCCTGACTCAAAGCAGGGAGGGTCGCTTCTGTCCCGCATTCAGATGTTTACCATGCTGGAGTTCCATCCCAACGGCCGACTAGTGTAA 858 48.02 MDNGREAGFSGSVGGGVDNWIPGSSDQLVWATEDDYAVWNGDGSGDTPSNSNYEGRQSQSNVFGRDRDLPSNRSKAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHSIQELRRPPPNWQEIVAAHDEERGVSSEPREEFQIPSIGSSSFGVETQRSYKGRHCKKFYTDEGCPYGDNCTFLHDEQSKARESVAISLGPGAGGGGSNIKPSNWKTRICNKWELTGYCPFGSKCHFAHGMGELHRYGGGLVDESRDSTSAPPDSKQGGSLLSRIQMFTMLEFHPNGRLV* 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7805764 7810149 - Vvi2g684 Vvi2g684 783383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g684 285 MobiDBLite consensus disorder prediction 1 20 - -
Vvi2g684 285 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 106 IPR000571 GO:0046872
Vvi2g684 285 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 210 236 IPR000571 GO:0046872
Vvi2g684 285 ProSiteProfiles Zinc finger C3H1-type profile. 155 183 IPR000571 GO:0046872
Vvi2g684 285 Pfam CCCH-type zinc finger 159 181 IPR041367 -
Vvi2g684 285 ProSiteProfiles Zinc finger C3H1-type profile. 209 237 IPR000571 GO:0046872
Vvi2g684 285 MobiDBLite consensus disorder prediction 39 70 - -
Vvi2g684 285 SUPERFAMILY CCCH zinc finger 79 112 IPR036855 GO:0046872
Vvi2g684 285 Gene3D - 203 241 - -
Vvi2g684 285 Gene3D - 76 112 - -
Vvi2g684 285 Gene3D - 150 187 - -
Vvi2g684 285 SUPERFAMILY CCCH zinc finger 154 183 IPR036855 GO:0046872
Vvi2g684 285 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Vvi2g684 285 MobiDBLite consensus disorder prediction 43 67 - -
Vvi2g684 285 SUPERFAMILY CCCH zinc finger 206 240 IPR036855 GO:0046872
Vvi2g684 285 SMART c3hfinal6 209 236 IPR000571 GO:0046872
Vvi2g684 285 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Vvi2g684 285 SMART c3hfinal6 155 182 IPR000571 GO:0046872
Vvi2g684 285 PANTHER CCCH ZINC FINGER/TIS11-RELATED 5 267 IPR045877 GO:0003729
Vvi2g684 285 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 5 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g684 - - - vvi:100262704 530.406
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g684 . . . . . . Bma07g00926 Bma14g00159 . . Cma02g01621 . Car02g01380 . . . Cpe05g00170 . . . . . . . . . . . . . . . . . . . . Chy04g00106 . Blo03g00868 Blo19g00195 . Bda09g00731 Bpe08g00827 Bpe11g00328 . . . Cmo02g01666 Cmo19g00243 . . . . . Cpe15g00204 Bhi05g00481 . . . . . . . . . . . . . . Csa03g04597 . Cme04g00130
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004224 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 4 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14606 PF00642 zf-CCCH 2.60E-11 CL0537 Vvi TF