Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g690 ATGGGGAAGAAGAAGCCCAAAGATCCCGAAAGCGGCGACGTTTTCAAAACCCTTTTCGGATATCTTCCCAAAGATGATGCTTCCTCACGTTCTCTCTTTTCCGACAGCAATCCCTTCCGTAGAAAGCCCAGTCTTTCTTCCCAAACACTTCCTTTTGAAAACCCTAGCATTCCCGATTCTGAGGTCAAGAAGCGGAAGAGGACCGAAGAAACTGACGAAACTTCTCAAACTCTTGAAGATGCTCCAAAAGCTCAGCATTTGGTCGAGCCCAAGAAATCTAAGAACGACAAACTACGAAACCCTAATTTGGGTTCTGAATCGAATGAAGAACTTCTTAATTCGAAGAGGAAGAGCGTGGTTAATCCTGCTGAAATGTTGGTCTCGAAGGAGGGGTTTGATGATGAAAGCAAGCTTTTGAGGACTGTCTTTGTGGGGAATTTGCCATTGAAGATCAAGAAGAAGGCTTTGTTGAAGGAATTTAGCGTGTTCGGGGAGGTTCAGTCTGTGAGGATTCGCTCTGTTCCCATCTTGGATAGCAAAAAACCAAGAAAGGGTGCGATAATCTCGAAAAAAATCAATGATTCTGTTGACAGTGTCCATGCTTATATTGTTTTCAAGACTGAGGAATCAGCACAGACTTCTTTGTCTCATAATATGTCTGTGATTGGAGGAAATCACATCCGTGTTGATAGGGCATGTCCACCTCGCAAAAAATTGAAAGGAGAGAATGATGCTTCACTTTATGATAATAAGAGGACTGTTTTTGTGGGAAACCTCCCTTTTGATGTGAAGGCTGAAGAAATTTATCAGTTGTTTTGCGGTATAGATAGCCTGGAGTCCAGTATTGAAGCTGTTCGGGTTGTTAGAAATCCTCATACAAGTGTAGGAAAGGGTATTGCCTATATTCTGTTTAAAACAAAGGATGCTGCAAACTTGGTTGTTAAGAAGCGAAACTTGAAGCTGCGGGATCGGGATCTGAGGCTCTATCATGCCAAGCCTAGTTCCACCACACCATCTAAGAGAAGAAATCCAACACCTGCAGAGGCAGATATTTCCCCAGCCAAGAAGTTGGCGTCTGGTTCAAGGATTTCCTTGGAAAGCAGCAATAGATTGAAGACAAAGTCTGTCATCTCCTACCAGGGCTTGCAAGCAAGCAAATCTGGTGGAAAAAACGGAAGCTGGAAAGCCAGACCCCAGAGGGTGGGCGGCGGAGCAAGAAAGCCAAGAAATTTCGGTAGGAAAATACGGGCCAAGCAAATGCAGTAG 1266 44.15 MGKKKPKDPESGDVFKTLFGYLPKDDASSRSLFSDSNPFRRKPSLSSQTLPFENPSIPDSEVKKRKRTEETDETSQTLEDAPKAQHLVEPKKSKNDKLRNPNLGSESNEELLNSKRKSVVNPAEMLVSKEGFDDESKLLRTVFVGNLPLKIKKKALLKEFSVFGEVQSVRIRSVPILDSKKPRKGAIISKKINDSVDSVHAYIVFKTEESAQTSLSHNMSVIGGNHIRVDRACPPRKKLKGENDASLYDNKRTVFVGNLPFDVKAEEIYQLFCGIDSLESSIEAVRVVRNPHTSVGKGIAYILFKTKDAANLVVKKRNLKLRDRDLRLYHAKPSSTTPSKRRNPTPAEADISPAKKLASGSRISLESSNRLKTKSVISYQGLQASKSGGKNGSWKARPQRVGGGARKPRNFGRKIRAKQMQ* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7879595 7885136 + Vvi2g690 Vvi2g690 783389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g690 421 SUPERFAMILY RNA-binding domain, RBD 246 342 IPR035979 GO:0003676
Vvi2g690 421 SUPERFAMILY RNA-binding domain, RBD 133 240 IPR035979 GO:0003676
Vvi2g690 421 MobiDBLite consensus disorder prediction 381 421 - -
Vvi2g690 421 CDD RRM1_RBM34 140 230 IPR034220 -
Vvi2g690 421 MobiDBLite consensus disorder prediction 407 421 - -
Vvi2g690 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 178 IPR000504 GO:0003723
Vvi2g690 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 254 325 IPR000504 GO:0003723
Vvi2g690 421 MobiDBLite consensus disorder prediction 24 116 - -
Vvi2g690 421 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 34 383 - -
Vvi2g690 421 SMART rrm1_1 253 329 IPR000504 GO:0003723
Vvi2g690 421 SMART rrm1_1 141 230 IPR000504 GO:0003723
Vvi2g690 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 333 IPR000504 GO:0003723
Vvi2g690 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 234 IPR000504 GO:0003723
Vvi2g690 421 CDD RRM2_RBM34 253 328 IPR034221 -
Vvi2g690 421 PANTHER RNA-BINDING PROTEIN 34 34 383 - -
Vvi2g690 421 Gene3D - 243 353 IPR012677 -
Vvi2g690 421 Gene3D - 56 242 IPR012677 -
Vvi2g690 421 MobiDBLite consensus disorder prediction 325 367 - -
Vvi2g690 421 MobiDBLite consensus disorder prediction 29 55 - -
Vvi2g690 421 MobiDBLite consensus disorder prediction 58 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g690 K14837 NOP12; nucleolar protein 12 - vvi:100266124 623.624
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g690 . Blo03g00119 Bda06g01271 . . Bpe07g00216 . . . . . . . . Sed13g0485 . . Bhi11g00020 Tan01g2206 Cmetu06g0815 . . Mch10g1675 . Cla10g00146 Cam10g0141 Cec10g0151 Cco10g0151 Clacu10g0145 Cmu10g0992 Cre10g0403 Cone8ag0607 . . . Lsi07g01181 . . Cme06g02459 . . . . . . . Bma12g00215 . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00155 Chy06g02154 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010480 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31