Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g694 ATGGACGGCCCAAACCCATTTTCAGGCCAGAAGAAGGAAGGTGAAGAAGGGAAGAAGCCACGTAGAGTGCCTTTGCTGAAGCTATTTGCGTTTGCAGACCTTTATGACTGTTTTCTCATGGCTGTTGGGTCCGTTGGTGCTTGCATTCATGGAGCTTCCGTGCCCGTTTTCTTTATTTTCTTTGGAAAGTTGATAGATATTATTGGATTGGCCTATCTTTTTCCTGCCGCTGCTTCCCATAAAGTTGCCAAGTATTCATTGGATTTTGTATACCTGAGCTTGGTTATATTATTTTCATCATGGGCTGAGGTTGCTTGTTGGATGCATACTGGGGAAAGGCAAGCAGCAAAGATGAGAATGGCCTATGTGAGATCCATGCTGAATCAAGATATTAGTCTTTTTGACACTGAAGCAACCACTGGAGAGGTCATTTCTGCAATTACCAGTGACATTATTGTTGTTCAAGATGCTCTTTCTGAGAAGGTGGGCAACTTCATGCACTATATAAGCCGGTTCATCGCTGGCTTTGCAATTGGGTTTATTAGAGTATGGCAAATTAGTCTTGTGACACTTGCTATTGTTCCCTTAATTGCCATTGCTGGTGGTGTCTATGCTTATATTGCAACTGGACTCATTGCCAGAGTTCGAAAATCCTATGTGAAGGCTGGTGAAATTGCTGAGGAGGTGATTGGGAATGTTAGGACAGTCCAAGCATTTGCAGGAGAAGAAAAAGCAGTAAAATTATACAAAACAGCTCTCTCCAATACTTACATATATGGAAGGAAAGCAGGCTTAGCCAAAGGTCTGGGGCTGGGTTCCATGCACTGTGTCCTTTTCCTTTCATGGGCATTGCTTGTTTGGTTCACTAGTGTTGTTGTTCATAAGAATATTGCCAATGGAGGAGAGTCTTTCACCACCATGCTTAATGTTGTTATTGCAGGCCTGTCACTAGGACAGGCGGCCCCAGACATTTCTGCATTCATTCGAGCCAAGGCATCCGCCTATCCCATTTTTGAGATGATAGAGAGGAACACAATCAGCAATACTAACTCCAAAACTGGACGGCAACTACACAAACTAGAGGGCCACATTCAATTCAGGGATATTTCCTTTAGTTATCCTTCTCGTCCTGATATACTTATCTTTAATAAGCTGTGTTTTGATATCCCTTCTGGGAAGATTGTGGCCCTTGTGGGAGGAAGTGGATCTGGAAAAAGCACTGTCATATCTTTGATTGAACGTTTCTATGAGCCTCTTGCTGGAGAAATACTACTAGATGGAAATGATATCAGGCAGCTTGACCTACAGTGGCTCAGGCAGCAAATCGGGTTGGTCAATCAAGAGCCTGCACTTTTCGCTACAAGCATCAGGGAGAACATTCTCTATGGAAAAGATGATGCCACCCTTGATGAGATTACACGAGCAGCCAAGCTTTCAGAGGCTATTTCTTTCATTAACAACCTCCCTGATAGATATGAAACTCAGGTGGGGGAGAGAGGAATACAGTTATCAGGTGGCCAGAAGCAAAGGATTGCAATAGCACGTGCGATTGTGAAAAATCCCTCGATTCTGCTACTGGATGAAGCTACAAGTGCACTTGATGCTGAGTCTGAGAAGAGTGTGCAGGAGGCACTTGATCGTGTTATGGTGGGACGAACAACTGTTGTAGTGGCCCATAGACTTTCTACCATAAGGAATGCTGATATGATAGCCGTCGTTCAACATGGGAAGATAGTGGAAACTGGGAGCCATGAGGAGCTCATTTCGAACCCAAGCAGTGCTTATGCATCACTTGTTCAACTGCAGGAGACAGCTTCTCTGAAACGCCACCCTTCACAGGGACCTACCATGGGAAGGCCACTAAGCATGAAGTGTTCACGGGAATTATCACGTACAACGACAAGCTTTGGTGCAAGTTTTCATTCTGATAGAGAATCTGTTGGCCGGATTGGTGCTGAGGGAGTGGAACCTGTAAAGTCAAAACAAGTTTCGGCAAGAAGATTGTATTCCATGGTGGGTCCTGACTGGTATTACGGGCTGGTAGGCACCATTTGTGCCCTAATTGCTGGAGCACAGATGCCACTTTTTGCTCTTGGAGTCACTGAGGCTCTCGTATCCTATTACATGGACTGGGACACAACACGCCATCAGGTTAAGAAGATTGCATTCCTCTTCTGTGGAGGTGCTTTCATAACAGTCATTGTTCATGCCATAGAGCACACATGCTTTGGGATCATGGGCGAGCGGCTCACTCTTCGCATTCGAGAAATGTTATTTTCTGCCATTTTGGGGAATGAGATTGGATGGTTTGATGATGCAAACAACACAAGTTCTATGCTTTCATCCCGTCTAGAGAGTGATGCAACTCTGTTCAGAACCATAATTGTTGATCGTTCTACAATTCTCATACAGAATTTAGGTTTGGTTGTCACCTCATTCATCATTGCCTTCATCTTGAACTGGAGGATCACACTTGTCGTCTTGGCTACATATCCATTGATCATCAGTGGTCACATCAGTGAGAAACTCTTCATGCAAGGCTATGGTGGAAATCTGAGCAAGGCCTATCTCAAAGCTAACATGATTGCCGGTGAGGCTGTGAGTAACATGCGCACTGTTGCTGCATTTTGCTCTGAAGAGAAGGTCCTTGACCTTTACTCTCGGGAGCTTGTGGAGCCTGCCAATAAGTCATTTACTCGTGGTCAAATTGCTGGCTTATTCTATGGGATCTCCCAGTTCTTCATCTTCTCATCCTATGGCCTTGCTTTATGGTATGGCTCTATACTGATGGGGAAAGAGCTTGCTAGCTTTAAATCCGTGATGAAATCATTTATGGTTCTGATTGTAACGGCATTAGCCATGGGTGAGACTCTGGCCCTGGCCCCAGACCTTCTAAAGGGGAACCAAATGGTGGCATCAGTGTTTGAATTGATGGACAGAAAGACGGAGGTAATGGGTGATGCTGGAGAAGAGCTCACAAGAGTGGAGGGTACAATTGATCTGAAGGGTATCGAGTTTAGGTACCCTTCCAGGCCAGATGTAGTGATTTTCAAGGACTTTGATCTAAGAGTTCGCGCAGGCAAAAGCATGGCATTAGTGGGGCAAAGTGGCTCTGGCAAGAGTTCAGTTCTTTCTCTTATACTCAGGTTTTACGACCCAATCGCTGGGAAAGTGATGATTGATGGGAAAGACATCAAGAAACTCAAGCTCAAATCCCTTAGAAAACACATTGGTCTAGTACAACAAGAACCAGCTCTCTTTGCCACATCAATCTTTGAAAACATCCTTTATGGAAAAGAGGGTGCTTCTGAAGCTGAAGTAATGGAAGCAGCTAAGCTTGCTAATGCACATAGTTTCATCTGTGGACTCCCTGAGGGCTATTCAACCAAAGTTGGAGAGAGAGGGGTGCAGCTATCTGGTGGCCAGAAACAAAGAGTAGCCATTGCCCGAGCTGTCCTAAAGAACCCAGAAATCTTGCTACTAGATGAAGCCACCAGTGCTTTAGACGTGGAGTCAGAGCGTGTGGTGCAACAAGCTCTAGACAGGTTGATGGTGAACCGAACAACAGTCCTGGTGGCACATAGGCTGTCCACCATAAAAAATGCAGACCAAATATCAGTTATACAAGACGGGAAGATAATAGAGCAAGGGACTCATTCAACTCTTGTAGAGAACAGGGAAGGAGCATATTTTAAGCTAATTAACCTACAGCAACAACAACAACAGCAATAA 3732 44.75 MDGPNPFSGQKKEGEEGKKPRRVPLLKLFAFADLYDCFLMAVGSVGACIHGASVPVFFIFFGKLIDIIGLAYLFPAAASHKVAKYSLDFVYLSLVILFSSWAEVACWMHTGERQAAKMRMAYVRSMLNQDISLFDTEATTGEVISAITSDIIVVQDALSEKVGNFMHYISRFIAGFAIGFIRVWQISLVTLAIVPLIAIAGGVYAYIATGLIARVRKSYVKAGEIAEEVIGNVRTVQAFAGEEKAVKLYKTALSNTYIYGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVVVHKNIANGGESFTTMLNVVIAGLSLGQAAPDISAFIRAKASAYPIFEMIERNTISNTNSKTGRQLHKLEGHIQFRDISFSYPSRPDILIFNKLCFDIPSGKIVALVGGSGSGKSTVISLIERFYEPLAGEILLDGNDIRQLDLQWLRQQIGLVNQEPALFATSIRENILYGKDDATLDEITRAAKLSEAISFINNLPDRYETQVGERGIQLSGGQKQRIAIARAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRLSTIRNADMIAVVQHGKIVETGSHEELISNPSSAYASLVQLQETASLKRHPSQGPTMGRPLSMKCSRELSRTTTSFGASFHSDRESVGRIGAEGVEPVKSKQVSARRLYSMVGPDWYYGLVGTICALIAGAQMPLFALGVTEALVSYYMDWDTTRHQVKKIAFLFCGGAFITVIVHAIEHTCFGIMGERLTLRIREMLFSAILGNEIGWFDDANNTSSMLSSRLESDATLFRTIIVDRSTILIQNLGLVVTSFIIAFILNWRITLVVLATYPLIISGHISEKLFMQGYGGNLSKAYLKANMIAGEAVSNMRTVAAFCSEEKVLDLYSRELVEPANKSFTRGQIAGLFYGISQFFIFSSYGLALWYGSILMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFELMDRKTEVMGDAGEELTRVEGTIDLKGIEFRYPSRPDVVIFKDFDLRVRAGKSMALVGQSGSGKSSVLSLILRFYDPIAGKVMIDGKDIKKLKLKSLRKHIGLVQQEPALFATSIFENILYGKEGASEAEVMEAAKLANAHSFICGLPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMVNRTTVLVAHRLSTIKNADQISVIQDGKIIEQGTHSTLVENREGAYFKLINLQQQQQQQ* 1244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7963835 7972650 - Vvi2g694 Vvi2g694 783393

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g694 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1237 IPR027417 -
Vvi2g694 1243 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524
Vvi2g694 1243 Pfam ABC transporter 383 531 IPR003439 GO:0005524
Vvi2g694 1243 Pfam ABC transporter 1018 1166 IPR003439 GO:0005524
Vvi2g694 1243 CDD ABC_6TM_Pgp_ABCB1_D2_like 669 984 - -
Vvi2g694 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 680 966 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g694 1243 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524
Vvi2g694 1243 Gene3D - 989 1243 IPR027417 -
Vvi2g694 1243 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 21 1238 IPR039421 -
Vvi2g694 1243 Pfam ABC transporter transmembrane region 681 952 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g694 1243 Pfam ABC transporter transmembrane region 45 312 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g694 1243 PANTHER ABC TRANSPORTER B FAMILY MEMBER 2 21 1238 - -
Vvi2g694 1243 CDD ABC_6TM_Pgp_ABCB1_D1_like 40 337 - -
Vvi2g694 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Vvi2g694 1243 SMART AAA_5 1026 1198 IPR003593 -
Vvi2g694 1243 SMART AAA_5 391 583 IPR003593 -
Vvi2g694 1243 Gene3D ABC transporter type 1, transmembrane domain 27 968 IPR036640 GO:0005524|GO:0016021
Vvi2g694 1243 SUPERFAMILY ABC transporter transmembrane region 666 983 IPR036640 GO:0005524|GO:0016021
Vvi2g694 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 999 1235 IPR003439 GO:0005524
Vvi2g694 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 329 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi2g694 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 602 IPR027417 -
Vvi2g694 1243 SUPERFAMILY ABC transporter transmembrane region 19 334 IPR036640 GO:0005524|GO:0016021
Vvi2g694 1243 CDD ABC_MTABC3_MDL1_MDL2 999 1236 - -
Vvi2g694 1243 Gene3D - 354 603 IPR027417 -
Vvi2g694 1243 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g694 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - vvi:100248951 2349.32
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g694 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0595 Cone12ag0582 . . . . . . . . . . . . . . . . . . . . . . . Bhi05g00466 . . Lac11g2437 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009637 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 2 2 1 33