Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g699 ATGAGAAGAGGCAGAAGAGGAAGAAAACTGGGCCGCCCTGTTCAAGCAGACGATAATTGGAGGCTCAAATCCTCTCTTCACAATCAGAGCCAACCCGACACCACTTCTCATGAAAATCTCCAATCCCCTCAACCCACACACGATTCCGATTTTCATCCCAAATCTCAAAGTCGCCCAAACTCCAAATGGGTATCGCGGAATCAGCGTGCCCATGTCGCCAAAACCACGTTTGTTAAGAAATCCGAAGTGGGTTCCGGCAGTGAGGTGAACGAACAAAAACAAGAAGAAGATGAACAAAAACAAGGGGAAGAAGAAGAGGGAGAAGGTCCTAGAAACGAGCAGACTGATTTGAATGAAGAGGTGGTTGAGGCTTCTGACTTTACCCATGATGTTGATGATGTTGGAAGTAGATTAGAGAAGTTAGTCGTGGGAGTGGAAGAGCCAGAATTGTCGGAGGATCGGCTAAGAATCAATGCCCAGTTGCAGGAGGACGAGTTACTTGCTATGCAGTCCATATATGGTGACAATGTCTTTATCCTTGATAGACAGCAAGGACTGCAATCTTTTCAGATCCATGTACATATCGAAGCCCTGGGTGAACTTACTGTAACTGCAAAGCTAAATTCATCAAGTGGCCGTACAACTGAAAGTGATGGTTCAGATGATTTCTCATACTCTTTCAATGTTCAGTATCTCCCACCAATTGTGTTGACATGTTTGCTACCCAAAGCATACCCTAGTCATCTCCCTCCTTATTTTACCATTTCTGTTCAGTGGTTGGATTCCATTAGTATTTCCAAACTCTGCTCTATGCTGGATTCATTGTGGAAGGAACAACCAGGACAGGAAGTTTTATACCAGTGGGTGGAATGGCTACATAGTTCGTGTCTTTCTTATCTTGGATTTGATAAAGAAATAGTTCTTGGTCCTTATAACATGGGAAATTCTGAAGATAGGCGTGCGATTTCAGGAAGTGTTTCCCTTGACGTTGATATTCCTTCAATGAAGAGTTACAATGATGAGAAACGCCATGAGAATTTTTCCAAAAACTTTCATGAATGCTGCATCTGTTTCACTGAATATGCAGGTACTGAATTCATCAAATTGCCATGCCAGCATTTCTTCTGCTGGAAATGCATGAAAACTTATTCTGAGATGCATGTAAAGGAAGGCACCGGAAGCCAGCTTCTTTGTCCAGAAACAAAATGCAGGGCCATGGTTCCACCTGTTTTGTTGAAACGATTGCTTGGTGATGAAGAATTTGAACATTGGGAGTCCTTAATGCTGCAGAAAACACTTGAGTCAATGTCTGATATGACCTATTGCCCGAGATGTGAAACAATCTGCATAGAGGATGAAGACCAGCATGCACAATGCTCAAAGTGCTTCTTTAGCTTCTGTACACTTTGCCGGGACCGCCGCCATGTGGGATTAGAATGCATGACTCCAGAAGTGAAGCTTCATATCTTGCAGGGGCGCCAGCATTCATCTCAGCTGAAGGATGAACAAAGGAAAAAGGAGCGTGAAATGATCAATGAGCTTCTTAGTGTTAAGGAAATACTCCGTGATGCTAAGCAATGCCCATCTTGTAAGATGGCAATTTCCCGAACTGAAGGTTGCAACAAGATGGTCTGCAATAACTGTGGCCAGTATTTCTGCTATCGCTGTAACCAGGCTATTGATGGATATGAACATTTCAGGGATAGTGCATGTGAACTTTTCCCACAAGAAATGATTCAGAACTGGGAATGGGACTGGGAAGCACGGCTTAATCAACGCCAAGTTGTGGGTCAGATTCAGGCTGAACTCTTTGCTGATCGTGGTCACTCATGCCCCATATGTCGTCAAATCAATGTAAAGGTCGGCAATAACAACCACATATTTTGTTGGTCATGCCAGAGCCACTATTGTTACTTATGCAAAGAGATTGTGAGGCGCAGCTCTCAGCATTTTGGGCCCAAGGGTTGCAAACAACATACGGTGGGATAG 1989 43.79 MRRGRRGRKLGRPVQADDNWRLKSSLHNQSQPDTTSHENLQSPQPTHDSDFHPKSQSRPNSKWVSRNQRAHVAKTTFVKKSEVGSGSEVNEQKQEEDEQKQGEEEEGEGPRNEQTDLNEEVVEASDFTHDVDDVGSRLEKLVVGVEEPELSEDRLRINAQLQEDELLAMQSIYGDNVFILDRQQGLQSFQIHVHIEALGELTVTAKLNSSSGRTTESDGSDDFSYSFNVQYLPPIVLTCLLPKAYPSHLPPYFTISVQWLDSISISKLCSMLDSLWKEQPGQEVLYQWVEWLHSSCLSYLGFDKEIVLGPYNMGNSEDRRAISGSVSLDVDIPSMKSYNDEKRHENFSKNFHECCICFTEYAGTEFIKLPCQHFFCWKCMKTYSEMHVKEGTGSQLLCPETKCRAMVPPVLLKRLLGDEEFEHWESLMLQKTLESMSDMTYCPRCETICIEDEDQHAQCSKCFFSFCTLCRDRRHVGLECMTPEVKLHILQGRQHSSQLKDEQRKKEREMINELLSVKEILRDAKQCPSCKMAISRTEGCNKMVCNNCGQYFCYRCNQAIDGYEHFRDSACELFPQEMIQNWEWDWEARLNQRQVVGQIQAELFADRGHSCPICRQINVKVGNNNHIFCWSCQSHYCYLCKEIVRRSSQHFGPKGCKQHTVG* 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8123286 8139515 + Vvi2g699 Vvi2g699 783398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g699 662 ProSiteProfiles RWD domain profile. 164 299 IPR006575 GO:0005515
Vvi2g699 662 Gene3D Ubiquitin Conjugating Enzyme 151 301 IPR016135 -
Vvi2g699 662 Pfam IBR domain, a half RING-finger domain 519 560 IPR002867 -
Vvi2g699 662 Pfam IBR domain, a half RING-finger domain 423 480 IPR002867 -
Vvi2g699 662 SMART ring_2 354 401 IPR001841 -
Vvi2g699 662 SMART ring_2 527 556 IPR001841 -
Vvi2g699 662 SMART ring_2 611 640 IPR001841 -
Vvi2g699 662 SUPERFAMILY RING/U-box 423 484 - -
Vvi2g699 662 MobiDBLite consensus disorder prediction 104 118 - -
Vvi2g699 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 437 IPR013083 -
Vvi2g699 662 ProSiteProfiles Zinc finger RING-type profile. 354 402 IPR001841 -
Vvi2g699 662 ProSitePatterns Zinc finger RING-type signature. 371 380 IPR017907 -
Vvi2g699 662 Pfam RWD domain 160 294 IPR006575 GO:0005515
Vvi2g699 662 MobiDBLite consensus disorder prediction 21 88 - -
Vvi2g699 662 Gene3D - 494 602 - -
Vvi2g699 662 SUPERFAMILY RING/U-box 513 566 - -
Vvi2g699 662 SUPERFAMILY RING/U-box 349 436 - -
Vvi2g699 662 Coils Coil 86 106 - -
Vvi2g699 662 ProSiteProfiles TRIAD supradomain profile. 350 577 IPR044066 -
Vvi2g699 662 SUPERFAMILY UBC-like 158 294 IPR016135 -
Vvi2g699 662 SMART RWD2001b 164 299 IPR006575 GO:0005515
Vvi2g699 662 SMART ibrneu5 509 571 IPR002867 -
Vvi2g699 662 SMART ibrneu5 422 480 IPR002867 -
Vvi2g699 662 MobiDBLite consensus disorder prediction 1 118 - -
Vvi2g699 662 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 143 595 - -
Vvi2g699 662 SUPERFAMILY RING/U-box 604 658 - -
Vvi2g699 662 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 143 595 IPR031127 GO:0004842|GO:0016567
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g699 K11971 RNF14, ARA54; E3 ubiquitin-protein ligase RNF14 [EC:2.3.2.31] - vvi:100262589 1356.27
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30