Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi2g700 | ATGTGCTCAATTGCAAGATTCTGCTTGGTGGAACCGGTTTTGTTGCAAATTCGAGTTGTTTCCAATCTAAAATGTCTCTTTAGAGTGTACCGTACGGCTTCTTCGGCGTTGTTGTTGGATGACGACCATGTGTTTGATACTAGTCCTGGTGTCCCAGTTGATGATCTTGTTGAAATTAATATTCAGAAATGTCAGCTGCGTGTTGGTAGAAAGCGCAATGAAATTAGGGTTATGAAGCGTCGGTCTCGGATCCATAGAAAGCATGTATTATCTCCTGTGGTAGTTAAAGTGTTTAAATCTTTGAATTGGGAAGTGGCCAGGCATATAAAGTTTTCAACAACAATGAAGAAGTATGGGTTTTCTCGTTCCATTGATGCATTCAGGACAGTTGTTAATGTGTTAGCTTTGGCGGGGATGCACATGGAGGTGTATGCTTTGCTTCGAGATATTGTTTGCTATTATAACAAAGTTAATTTGGATGCTTTTGAGTTGTTCCCCATTTTGTTGGAGTCGCCTAAAGATGCAGCAAGATCAGTTATTGTATTTGATTTACTTATTAAGGTTTTTGCAGCAAATTCAATGCTTGAAAATGCTGTGGACGTATTTTTGCAAGCTAAGAAAACTGGGCTGGAATTGAGTACTCGCTCCTGCAATTTCTTGCTCAAGTGTCTGGCTGAAGCAAATAGAAGGGAATTTCTCAGGAGTTTGTTTGAAGAAATGAAGAGCACCGGGCCACCACCTAATGTTTTCACTTACACCATTATGATGAACTTTTACTGTAAAGGAAATTTTGGGGAGGCAGACATTGATACTCGACAAGCAACTGAGATTCTAGAGGAAATGGAGAGAAATGGGGAAAGCCCAACTGTTGTAACATATAGTACTTATATTTATGGACTTTGTAGGGTTGGTTATGTTGAGTCTGCATTGGATTTTGTTCGGAGCTTGATATCTGCAAATGGGCTTGTCAATGTTTATTGTTATAATGCTATTATTCATGGGCTTTGCAAAAAAGGTGAACTAGATGAAGCTTTGAAGGTGTTGGAAGAAATGAAGAGTTGTGGAATATCACCAGATGTTTATACTTACAGCATCTTGATTCATGGATTTTGCAAACAGGGAGATGTTGAGAAAGGTCTTTATTTAATTGAGGAAATGAAATACAGTAACATGGAACCTTCACTGGTTAGCTATAGCTCACTCTTTCATGGTCTCTGTAAGAAGAGGCTCTCGGATATTTCACTAGATATATTCCGTGATCTTGGGGCTGCTGGATACAAGTATGACCAAACTGCTTATAGCATCTTAATCAAAGGATTTTGTATGCAGGGGGATTTGGATTCTGCCCACAAACTTATGGAGGAGATGGTCAGAAATAATTTGGCTCCTGATCCTTCTAATTTTGAGAGTCTGGTTCATGGCTTTTGCAAGATGGGGCTCTGGGTTAATGCCTTGGAATTTTTCAATATGATGCTAGAAGGTGGAATTCTGCCTAGTATTGCAACTTGCAATGTTATTATTGATGCGCATTGCAGGGAAGGCCGTGTGGAAGAAGCTTTGAACCTTATGAATGAAATGCAAACACAAGGGATTTTCCCCAACTTGTTTACTTATAATGCTGTCATCAACAGGTTGTGCAAGGAAAGAAAGTCAGAAAGAGCATTAGAACTTTTTCCTTTAATGCTAAAGAGGAATGTTCTTCCTAGCGTTGTTGTTTATAGCACCCTTATAGATGGTTTTGCTAAACAGTCAAACTCACAGAAGGCCTTGATGTTATACGCAAGAATGTTAAAGATTGGAGTTACACCAGACATGGTTGCCTATACAATTCTTATCAACATATTATGCCACAGGAGCAGAATGTGTGAAGCATATAATCTGTTTAAGAAAATGACTGAAAACGGTATGACTCCAGATAAGATTTCTTACACATCAGTTATAGCTGGGTTTTGTAGAATCGGGGACATGAGGAAGGCATGGGCATTGTTCAATGAAATGTTACAGAGAGGTCATTTGCCTACTGTTGTTACTTATACCTCTCTAGTTGATGGATATTGCAAGATGAATCGCATTGATATTGCTGATATGTTAATCGATGAAATGAAAAGAAAGGGGATCACTCCTGATGTGGTGACTTATAATGTTCTCATTGCAGCACACAGGAGACGTGGAAATCTTGATAAAGCACTTGAAATGCTTAATGAAATGAAGGAGAATGGTGTTCTCCCAGATCATATGACCTACATGATGCTGGAGTGGCTACTGAAGGCTAAGAAGCTGAAAACAAGACGTAGCAAAGACTAG | 2304 | 39.11 | MCSIARFCLVEPVLLQIRVVSNLKCLFRVYRTASSALLLDDDHVFDTSPGVPVDDLVEINIQKCQLRVGRKRNEIRVMKRRSRIHRKHVLSPVVVKVFKSLNWEVARHIKFSTTMKKYGFSRSIDAFRTVVNVLALAGMHMEVYALLRDIVCYYNKVNLDAFELFPILLESPKDAARSVIVFDLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTYMMLEWLLKAKKLKTRRSKD* | 768 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 8161665 | 8170322 | + | Vvi2g700 | Vvi2g700 | 783399 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 359 | 393 | IPR002885 | - | |
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 709 | 743 | IPR002885 | - | |
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 248 | 288 | IPR002885 | - | |
| Vvi2g700 | 767 | Gene3D | Tetratricopeptide repeat domain | 179 | 320 | IPR011990 | GO:0005515 | |
| Vvi2g700 | 767 | Gene3D | Tetratricopeptide repeat domain | 582 | 766 | IPR011990 | GO:0005515 | |
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 499 | 533 | IPR002885 | - | |
| Vvi2g700 | 767 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 1 | 749 | - | - | |
| Vvi2g700 | 767 | Pfam | Pentatricopeptide repeat domain | 697 | 749 | IPR002885 | - | |
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 213 | 247 | IPR002885 | - | |
| Vvi2g700 | 767 | Pfam | PPR repeat | 285 | 314 | IPR002885 | - | |
| Vvi2g700 | 767 | Pfam | PPR repeat | 495 | 527 | IPR002885 | - | |
| Vvi2g700 | 767 | Pfam | PPR repeat | 600 | 632 | IPR002885 | - | |
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 674 | 708 | IPR002885 | - | |
| Vvi2g700 | 767 | PANTHER | (PPR) REPEAT PROTEIN, PUTATIVE-RELATED | 1 | 749 | - | - | |
| Vvi2g700 | 767 | Gene3D | Tetratricopeptide repeat domain | 482 | 581 | IPR011990 | GO:0005515 | |
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 464 | 498 | IPR002885 | - | |
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 429 | 463 | IPR002885 | - | |
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 569 | 603 | IPR002885 | - | |
| Vvi2g700 | 767 | Pfam | PPR repeat family | 638 | 687 | IPR002885 | - | |
| Vvi2g700 | 767 | Pfam | PPR repeat family | 324 | 372 | IPR002885 | - | |
| Vvi2g700 | 767 | Pfam | PPR repeat family | 533 | 582 | IPR002885 | - | |
| Vvi2g700 | 767 | Pfam | PPR repeat family | 430 | 477 | IPR002885 | - | |
| Vvi2g700 | 767 | Pfam | PPR repeat family | 215 | 261 | IPR002885 | - | |
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 324 | 358 | IPR002885 | - | |
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 534 | 568 | IPR002885 | - | |
| Vvi2g700 | 767 | Pfam | PPR repeat | 396 | 421 | IPR002885 | - | |
| Vvi2g700 | 767 | TIGRFAM | PPR: pentatricopeptide repeat domain | 711 | 744 | IPR002885 | - | |
| Vvi2g700 | 767 | TIGRFAM | PPR: pentatricopeptide repeat domain | 502 | 534 | IPR002885 | - | |
| Vvi2g700 | 767 | TIGRFAM | PPR: pentatricopeptide repeat domain | 536 | 569 | IPR002885 | - | |
| Vvi2g700 | 767 | TIGRFAM | PPR: pentatricopeptide repeat domain | 432 | 464 | IPR002885 | - | |
| Vvi2g700 | 767 | TIGRFAM | PPR: pentatricopeptide repeat domain | 291 | 319 | IPR002885 | - | |
| Vvi2g700 | 767 | TIGRFAM | PPR: pentatricopeptide repeat domain | 326 | 360 | IPR002885 | - | |
| Vvi2g700 | 767 | TIGRFAM | PPR: pentatricopeptide repeat domain | 641 | 674 | IPR002885 | - | |
| Vvi2g700 | 767 | TIGRFAM | PPR: pentatricopeptide repeat domain | 676 | 710 | IPR002885 | - | |
| Vvi2g700 | 767 | TIGRFAM | PPR: pentatricopeptide repeat domain | 469 | 499 | IPR002885 | - | |
| Vvi2g700 | 767 | TIGRFAM | PPR: pentatricopeptide repeat domain | 606 | 639 | IPR002885 | - | |
| Vvi2g700 | 767 | TIGRFAM | PPR: pentatricopeptide repeat domain | 361 | 394 | IPR002885 | - | |
| Vvi2g700 | 767 | TIGRFAM | PPR: pentatricopeptide repeat domain | 571 | 604 | IPR002885 | - | |
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 604 | 638 | IPR002885 | - | |
| Vvi2g700 | 767 | SUPERFAMILY | HCP-like | 324 | 670 | - | - | |
| Vvi2g700 | 767 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 639 | 673 | IPR002885 | - | |
| Vvi2g700 | 767 | Gene3D | Tetratricopeptide repeat domain | 321 | 385 | IPR011990 | GO:0005515 | |
| Vvi2g700 | 767 | Gene3D | Tetratricopeptide repeat domain | 386 | 459 | IPR011990 | GO:0005515 |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi2g700 | - | - | - | vvi:100852839 | 1532.69 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi2g700 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Bda07g00085 | . | . | Bpe11g00322 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0003935 | 0 | 8 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 26 |