Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g702 ATGCCGCGCACTAGCACACTGGAGTGCCCTGGTTGTCCTCCAATCAGAGCTTTAACATTTGATGTCCTCGGTCTTGTTAAAGTTACTGAAGCTCGTAGTAAGGAAGGAGGAATTCCCAAGGTGGTGGATAGATGGGGTGAGCCCGACTCATCCAAATGCATACTTGCTGCTTCTATTGATGACCGCAAATCTGGCCCTTTGTTAGCTATTGCTAGGGAAGGTGGTCTGATTGAGATTCTTAACCCTCTTAATGGGCATCCTTGTCTTTCAATCTCCAATATCATTGATAATGGTCCTGAGCCTGGAGATGATGCTATTGTTGGGTTGCATTTGTTCAAAAAGCAAAATTTGGACTTATCGTCAAGGTCACACACCTTGCTTACATGTACAACAAAAGGAAATGCAAGTATGAGGTCTGTTGAACTTACCAGTTCACATGCGGATTCCACCTCAAGTGTTTCTTCAAGAACATGGAATGTATGTGCTTCTGGTAATATCTTATGTTCTCAAGTGGATGGAAATGAAAACTATGCTTTGTTTGGCGGGAAGGGTGTTGAAGTTAATGTTTGGGATCTTGAACAGGGTACTAAGATTTGGACTGCAAAATCTCCTCCTAAAAACAGCCTTGGCTTATTCACTCCAACTTGGTTTACATCTGCAACTTTCCTAAGTAAAGATGACCACCGTAAATTTGTTGCTGGCACAAACAGTCATCAGGTTCGCCTTTATGATATTTCTGCTCAGAGAAGGCCTGTTATATCATTTGACTTCCGGGAGACCCCTATTAAAGCAGTTGCTGAAGATCAAGATGGCTATACCATCTACATAGGAAATGGATCAGGCGACCTTGCTTCTGTTGACATGCGCACAGGGAAATTGTTAGGATGCTTTTTGGGAAAGTGTTCTGGAAGCATTAGATCCATAGCCAGGCATCCAGAGCTCCCTGTGATAGCATCATGTGGATTGGATAGCTACTTGCGCTTTTGGGATATAAAAACAAGGAAGGTTCTTTCTGCGGTTTTCCTGAAGCAGCCTCTTACAAATGTTGTTTTTGATTCTAATTTTGCTGAGGAAGAAGTTCCATCTTCTGTAGTGGATCCACCAACTGAAGCACAAAATACGAATGAGACCCAGGAGAGTGATGAGGAAGAAGTGCAGCCTCTGAAAAGAAAGAAAAAATCGTCAAAGCATAGTGGAAGCAAGAAGCCGAAACCCAAGAAAAGAAGCAAAAAGGCTCAAGACGAGACGGTTGATGATTCATCATGA 1266 42.81 MPRTSTLECPGCPPIRALTFDVLGLVKVTEARSKEGGIPKVVDRWGEPDSSKCILAASIDDRKSGPLLAIAREGGLIEILNPLNGHPCLSISNIIDNGPEPGDDAIVGLHLFKKQNLDLSSRSHTLLTCTTKGNASMRSVELTSSHADSTSSVSSRTWNVCASGNILCSQVDGNENYALFGGKGVEVNVWDLEQGTKIWTAKSPPKNSLGLFTPTWFTSATFLSKDDHRKFVAGTNSHQVRLYDISAQRRPVISFDFRETPIKAVAEDQDGYTIYIGNGSGDLASVDMRTGKLLGCFLGKCSGSIRSIARHPELPVIASCGLDSYLRFWDIKTRKVLSAVFLKQPLTNVVFDSNFAEEEVPSSVVDPPTEAQNTNETQESDEEEVQPLKRKKKSSKHSGSKKPKPKKRSKKAQDETVDDSS* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8175756 8185460 - Vvi2g702 Vvi2g702 783401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g702 421 ProSitePatterns Trp-Asp (WD) repeats signature. 317 331 IPR019775 -
Vvi2g702 421 SUPERFAMILY WD40 repeat-like 52 354 IPR036322 GO:0005515
Vvi2g702 421 MobiDBLite consensus disorder prediction 360 421 - -
Vvi2g702 421 Gene3D - 103 355 IPR015943 GO:0005515
Vvi2g702 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 339 IPR001680 GO:0005515
Vvi2g702 421 PANTHER BNAANNG21410D PROTEIN 1 401 - -
Vvi2g702 421 SMART WD40_4 290 330 IPR001680 GO:0005515
Vvi2g702 421 SMART WD40_4 205 244 IPR001680 GO:0005515
Vvi2g702 421 MobiDBLite consensus disorder prediction 391 408 - -
Vvi2g702 421 PANTHER NOP SEVEN ASSOCIATED PROTEIN 1 1 401 IPR037379 GO:0005730|GO:0042273
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g702 K14841 NSA1, WDR74; ribosome biogenesis protein NSA1 - vvi:100260812 808.135
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g702 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004938 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 39