Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g703 ATGGGGCGTCTAAAGCTGCAATCTGGAATCAAGTCAATTGAGGAAGAACCTGAAGATTGTGAATCTACATCTTCTAATAAGGCTGCATTAGCATGTATGATCAATTCAGAAGTAGGTGCTGTATTGGCAGTCATGAGGAGGAATGTCAGATGGGGAGGTCGTTATATGTCAGGCGATGATCATCTTGAGCATTCTCTTATTCAGTCTTTAAAGGCATTGCGGAAGCAAATATTTTCATGGCAGCATCAGTGGCATACCATCAACCCAGCCGTGTATCTCCAGCCATTTCTGGATGTAATTCGATCTGACGAGACTGGGGCACCAATTACAGGTGTTGCCTTGTCATCTGTTTACAAGATTGTAACTCTTGATGTCCTTTGTTTGAATACTGTCAATGTGGAAGATGCTATGCACTTGGTAGTTGATGCTGTAACTAGCTGCCGATTTGAGGTAACTGATCCAGCGTCAGAAGAATTAGTACTCATGAAAATACTTCAAGTTCTTCTGGCTTGCATGAAAAGTAAAGTGTCAGTTATGTTGAGTAATCAGCATGTTTGCACCATTGTGAACACTTGTTACCGCATAGTTCATCAAGCAGCAACAAAAAGTGAGTTGTTGCAGCGGATAGCTCGCCATACGATGCACGAACTTGTCAGGTGTATTTTTTCACACCTTCCTGATGTTGGCAACACCGAACATGCATTGGTTAACAGAGGCAGTTCTGTGAAGCTTGAGGGCAGTGGGCAAGATAATGAGTATAACTTTGGAAATAAACAGTTAGAGAATGGCAATGGTGCTTCTGAATATGATGGTCAACCATCCTCGGAGGCTACTCCATATGATTTGCATCTAATGACAGAACCATATGGGGTCCCCTGCATGGTGGAGATATTTCACTTCTTGTGCTCTCTGTTAAATGTTGTTGAGCACATGGGAATGGGTTCTAGATCAAATACTATGGCATTTGATGAAGATTTGCCTCTTTTTGCCCTGGGCTTGATCAATTCTGCTATTGAATTGGGTGGGCTTTCTATTCGTAGACACCCCAGGTTACTAAGTCTGATACAGGATGAACTATTTCGTAATCTGATGCAGTTTGGCTTGTCAACGAGTCCACTAATTCTTTCTATGGTTTGTAGCATTGTTCTCAATCTATATCAGCATTTGCGGACTGAACTCAAACTACAACTTGAGGCTTTCTTTTCGTGTGTAATCCTGAGACTTGCTCAAAGCAAATATGGTGCTTCATACCAGCAGCAAGAAGTTGCTATGGAGGCTCTAGTCGACTTTTGCAGGCAGAAAACTTTCATGGTGGAGATGTATGCCAACTTAGATTGTGACATAACTTGCAGCAATGTGTTTGAAGACCTTGCTAATTTGTTGTCAAAGAGTGCATTTCCTGTGAACTGCCCTTTGTCTGCTATGCATATTCTTGCTTTGGATGGCCTGATAGCTGTAATTCAGGGAATGGCCGAGAGGATAGGCAATGGATCACTTGGTTCAGAACATGTTTGGGTTCCCTTTGTCTGCCGGAGGAAGTATATTAAAAGAAGACTGATGATTGGAGCTGATCATTTTAACCGGGACCCAAAGAAAGGGCTAGAGTTTCTCCAAGTAACCCATCTCTTGCCTGACAAACTTGACCCACAAAGTGTTGCTTGCTTTTTCAGGTACACTGCTGGGTTGGATAAGAATCTGGTTGGGGATTTCCTGGGAAACCATGATGAGTTTTGTGTTCAGGTTCTTCATGAATTTGCTGGGACTTTTGATTTCCAAGACATGAATCTGGATACTGCATTGCGGCTGTTCTTGGAAACTTTCCGACTGCCTGGAGAATCACAGAAGATACAGAGGGTCCTTGAGGCTTTCTCGGAGAGATATTATGAGCAATCACCCCAGATTCTAGCTAACAAGGATGCTGCTCTGTTGTTATCCTATTCACTTATAATGCTGAACACAGACCAGCACAATGTACAAGTGAAGAAAAAGATGACAGAAGAGGATTTCATTCGGAATAATCGGCACATTAATGGAGGAAATGATCTCCCTAGAGATTTCCTGTCTGAGCTGTACCATTCAATCTGCAAGAATGAGATCCGCACAACTCCAGAGCAGGGTGCTGGTTTCCCTGAAATGACCCCAAGCCGTTGGATTGATCTAATGCATAAGTCCAAGAAAACTGCTCCATTCATTGTGGCAGATTCCAGAGCTTTCCTTGACCATGATATGTTTGCTATAATGTCTGGTCCAACTATTGCAGCTATCTCTGTTGTATTTGATCATGCAGAACACGAAGAAGTTTACCAAACATGTATTGACGGCTTTTTAGCTGTCGCAAAAATCTCAGCCTGCCACCATCTTGAAGATGTTCTAGATGATTTAGTTGTCTCTCTCTGTAAGTTCACAACTCTCTTGAATCCATCACCTGGTGAGGAATCTGTACAAGCCTTTGGGGATGACACAAAAGCAAGGATGGCAACTGTAACACTTGCACGGGCACTCATCTGGGCTGCAGGGCGACCCCAAAAAGGGAACAGTTCTCCTGAGGATGAAGACACTGCAGTTTTCTGCCTGGAGTTGCTGATTGCAATTACTCTAAACAATCGAGACAGAATTAAGCTTCTGTGGCAAGGTGTTTATGAACACATATCTAATATAGTCCAGTCTACAGTGATGCCTTGTGCCCTAGTGGAGAAGGCTGTTTTTGGACTTCTTCGTATTTGCCAGCGGCTGCTTCCTTATAAAGAAAACCTGGCTGATGAACTTTTGAGGTCACTACAGCTGGTACTGAAGCTGGATGCGCGGGTTGCTGATGCATATTGTGAGCAAATAACTCAGGAAGTCAGTCGCCTTGTGAAAGCAAATGCCACTCACATTAGATCGCAAATGGGTTGGCGCACAATTACATCCTTACTTTCCATCACAGCTCGGCACCCAGAGGCTTCCGAAGCAGGATTTGATGCCTTATTGTTCATCATGTCTGATGGAGCCCACTTGTTGCCTGCCAACTATGTTCTCTGTGTAGATGCCGCAAGGCAGTTTTCTGAGTCTCGTGTTGGTCAGGCAGAGCGGTCCGTGCGTGCTCTGGATCTTATGGCTGGTTCAGTTGTTTGTTTATCACATTGGGCCCTGGAAGCTAAGCAAGCAATGGCGGAGGAGGAGCTTTCAAAAATGTCTCAGGATATTGGGGAGATGTGGCTGAGGCTGGTGCAGGGGTTGAGAAAAGTTTGTTTGGACCAGAGAGAAGAAAAAGACTATAGAAACATGGAAGGCACACTTAGCCTTGCTATGAAGCTCCTGTCAAAAGTATTTTTACAGTTGCTGAATGATCTTGCACAGTTAACAACCTTCTGCAAACTATGGCTGGGTGTTCTTAGCCGGATGGAAAAATATATGAAGGTGAAGGTCAAAGGAAAGAGAAGCGAGAAGCTCCCAGAACTAGTTCCAGAGCTCCTCAAAAACACATTGCTTGTAATGAAGACAAGGGGAGTGCTTGTGCAGAGAAGTGCTCTGGGTGGAGATAGTTTGTGGGAGCTGACATGGTTACATGTGAATAACATTGCTCCAACTTTGCAATCAGAAGTGTTTCCTGATCAAGGTTTGGATCAGCCACGTGATAAGAAGGATGAAACAGGGAGAAGTCTGGTGTCTGATGAAATGGGTTCTGTTCCTTCAAATGAAACTGTGGTTTCAGAAGGTGGTCTTATTACTAGCAACCATGTTAAGTCCTTATTCTTGTTGGCCCAACAAATGAGAGCCCAACTCCTCAACAAAGCAGCTTATGCTTCCATATAA 3795 43.74 MGRLKLQSGIKSIEEEPEDCESTSSNKAALACMINSEVGAVLAVMRRNVRWGGRYMSGDDHLEHSLIQSLKALRKQIFSWQHQWHTINPAVYLQPFLDVIRSDETGAPITGVALSSVYKIVTLDVLCLNTVNVEDAMHLVVDAVTSCRFEVTDPASEELVLMKILQVLLACMKSKVSVMLSNQHVCTIVNTCYRIVHQAATKSELLQRIARHTMHELVRCIFSHLPDVGNTEHALVNRGSSVKLEGSGQDNEYNFGNKQLENGNGASEYDGQPSSEATPYDLHLMTEPYGVPCMVEIFHFLCSLLNVVEHMGMGSRSNTMAFDEDLPLFALGLINSAIELGGLSIRRHPRLLSLIQDELFRNLMQFGLSTSPLILSMVCSIVLNLYQHLRTELKLQLEAFFSCVILRLAQSKYGASYQQQEVAMEALVDFCRQKTFMVEMYANLDCDITCSNVFEDLANLLSKSAFPVNCPLSAMHILALDGLIAVIQGMAERIGNGSLGSEHVWVPFVCRRKYIKRRLMIGADHFNRDPKKGLEFLQVTHLLPDKLDPQSVACFFRYTAGLDKNLVGDFLGNHDEFCVQVLHEFAGTFDFQDMNLDTALRLFLETFRLPGESQKIQRVLEAFSERYYEQSPQILANKDAALLLSYSLIMLNTDQHNVQVKKKMTEEDFIRNNRHINGGNDLPRDFLSELYHSICKNEIRTTPEQGAGFPEMTPSRWIDLMHKSKKTAPFIVADSRAFLDHDMFAIMSGPTIAAISVVFDHAEHEEVYQTCIDGFLAVAKISACHHLEDVLDDLVVSLCKFTTLLNPSPGEESVQAFGDDTKARMATVTLARALIWAAGRPQKGNSSPEDEDTAVFCLELLIAITLNNRDRIKLLWQGVYEHISNIVQSTVMPCALVEKAVFGLLRICQRLLPYKENLADELLRSLQLVLKLDARVADAYCEQITQEVSRLVKANATHIRSQMGWRTITSLLSITARHPEASEAGFDALLFIMSDGAHLLPANYVLCVDAARQFSESRVGQAERSVRALDLMAGSVVCLSHWALEAKQAMAEEELSKMSQDIGEMWLRLVQGLRKVCLDQREEKDYRNMEGTLSLAMKLLSKVFLQLLNDLAQLTTFCKLWLGVLSRMEKYMKVKVKGKRSEKLPELVPELLKNTLLVMKTRGVLVQRSALGGDSLWELTWLHVNNIAPTLQSEVFPDQGLDQPRDKKDETGRSLVSDEMGSVPSNETVVSEGGLITSNHVKSLFLLAQQMRAQLLNKAAYASI* 1265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8203532 8211263 + Vvi2g703 Vvi2g703 783402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g703 1264 Gene3D - 509 591 - -
Vvi2g703 1264 SMART sec7_5 512 699 IPR000904 GO:0005085|GO:0032012
Vvi2g703 1264 MobiDBLite consensus disorder prediction 1 20 - -
Vvi2g703 1264 MobiDBLite consensus disorder prediction 1200 1215 - -
Vvi2g703 1264 Pfam Sec7 domain 516 699 IPR000904 GO:0005085|GO:0032012
Vvi2g703 1264 MobiDBLite consensus disorder prediction 1196 1228 - -
Vvi2g703 1264 SUPERFAMILY Sec7 domain 513 700 IPR035999 GO:0005085|GO:0032012
Vvi2g703 1264 ProSiteProfiles SEC7 domain profile. 508 697 IPR000904 GO:0005085|GO:0032012
Vvi2g703 1264 CDD Sec7 516 699 IPR000904 GO:0005085|GO:0032012
Vvi2g703 1264 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 292 453 IPR032691 -
Vvi2g703 1264 Gene3D - 592 709 IPR023394 -
Vvi2g703 1264 PANTHER ARF GUANINE-NUCLEOTIDE EXCHANGE FACTOR GNOM-LIKE 277 498 - -
Vvi2g703 1264 PANTHER ARF GUANINE-NUCLEOTIDE EXCHANGE FACTOR GNOM-LIKE 1083 1200 - -
Vvi2g703 1264 PANTHER ARF GUANINE-NUCLEOTIDE EXCHANGE FACTOR GNOM-LIKE 10 277 - -
Vvi2g703 1264 PANTHER ARF GUANINE-NUCLEOTIDE EXCHANGE FACTOR GNOM-LIKE 503 829 - -
Vvi2g703 1264 PANTHER ARF GUANINE-NUCLEOTIDE EXCHANGE FACTOR GNOM-LIKE 830 1082 - -
Vvi2g703 1264 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 503 829 - -
Vvi2g703 1264 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 1083 1200 - -
Vvi2g703 1264 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 277 498 - -
Vvi2g703 1264 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 10 277 - -
Vvi2g703 1264 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 830 1082 - -
Vvi2g703 1264 SUPERFAMILY ARM repeat 346 1110 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g703 K18443 GBF1; golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 - vvi:100247152 1617.82
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003558 2 3 2 1 1 1 2 1 1 3 1 1 2 2 2 2 1 2 2 1 2 1 1 1 1 1 2 2 2 1 47