Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g705 ATGGTCGATGATCCTGCCACTAATTCGATCGTGTCCTGGAGTCCAACCAACAATAGCTTCGTGGTTTGGAACCCTCCCGAGTTCGCAAGAGACCTTTTACCGAAGTACTTCAAGCACAACAATTTTTCGAGCTTTGTGAGGCAGTTGAACACATATCATCCAAAAACAGAAGTGGGGATGGAAAAACAAAAAGAAAAGAAAGCACGATTCAGGGATTCAGGAAGGTTGATCCAGACCGTTGGGAATTTGCAAATGAGGGATTTTTGA 267 43.82 MVDDPATNSIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYHPKTEVGMEKQKEKKARFRDSGRLIQTVGNLQMRDF* 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8222937 8233818 + Vvi2g705 Vvi2g705 783404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g705 88 Gene3D - 1 81 IPR036388 -
Vvi2g705 88 SUPERFAMILY Winged helix DNA-binding domain 1 53 IPR036390 -
Vvi2g705 88 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-4D 1 52 - -
Vvi2g705 88 ProSiteProfiles Ets-domain profile. 1 71 IPR000418 GO:0003700|GO:0006355|GO:0043565
Vvi2g705 88 Pfam HSF-type DNA-binding 1 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g705 88 SMART hsfneu3 1 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g705 88 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 52 IPR027725 -
Vvi2g705 88 PRINTS Heat shock factor (HSF) domain signature 32 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi2g705 88 PRINTS Heat shock factor (HSF) domain signature 45 57 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g705 K09419 HSFF; heat shock transcription factor, other eukaryote - vvi:100243710 115.546
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g705 Blo02g00985 . Bda06g01262 Bda08g00638 . . . . Cmo06g00645 Cmo16g01225 . . . . Sed10g1395 Cpe14g00974 . Bhi11g00015 Tan08g0173 Cmetu05g1605 . . Mch10g1679 . Cla10g00139 Cam10g0138 Cec10g0148 Cco10g0148 Clacu10g0142 Cmu10g0989 Cre10g0400 . . . . Lsi07g01178 . . Cme06g02455 . . . . . . Bma05g00705 . . . . Cma06g00639 Cma16g01175 Car06g00570 Car16g01108 . . . . . . . . . . . . . . . . . Csa03g00150 Chy06g02159 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004648 1 1 1 1 1 2 1 2 2 1 2 2 2 1 1 2 2 2 2 1 1 1 1 1 1 1 1 1 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14608 PF00447 HSF_DNA-bind 5.50E-21 CL0123 Vvi TF