Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g709 ATGAGCTTTCAGGATCTCGAATCTGGGCGCCCTTTGGCTCAGTCCCGGCGAGATTACATCAATGCTAAGCAAGATCCGACGCAGGCCGTTGCTTCTGGCATTTTCCAGATCAATACCGCGGTTTCAACTTTTCAGCGACTCGTTAATACGCTTGGAACCCCCAAGGACACGTCAGAGCTACGGGAGAAGTTGCACAAGACGAGGCTACATATTGGGCAGTTAGTCAAGGATACCTCTGCTAAACTTAAGCAAGCTAGCGAAACAGATCATCATGCTGAAGTTAGTGCCAGCAAGAAGATTGCAGATGCTAAACTGGCAAAAGATTTTCAAGCAGTTTTAAAAGAGTTTCAGAAGGCTCAACGGCTGGCAGCAGAAAGGGAAACGGCATATACTCCTTTTGTTCCCCAGTCAGTTCTTCCTTCCAGCTATACGGCAAGTGAGATAGATGTAGGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAGACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATTGAAGAAAGGGAGCAGGGAATACAAGAAATCCAGCACCAAATTGGCGAGGTGAATGAGATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAAAATCCCAACTTGCAAAAGCATCAAAGACCCAACGATCAAATTCATCTCTGACCTGCTTGCTGTTGGTGATATTTGGGATCATCCTCCTCATTGTGATCATCGTAATTGCAGCTTAA 825 45.82 MSFQDLESGRPLAQSRRDYINAKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTSELREKLHKTRLHIGQLVKDTSAKLKQASETDHHAEVSASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQSVLPSSYTASEIDVGPDKSPEQRALLVESRRQEVLLLDNEIVFNEAIIEEREQGIQEIQHQIGEVNEIFKDLAVLVHEQGVMIDDIGSNIDGAQAATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIILLIVIIVIAA* 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8287288 8298042 - Vvi2g709 Vvi2g709 783408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g709 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Vvi2g709 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vvi2g709 274 PANTHER SYNTAXIN OF PLANTS PROTEIN 6 273 - -
Vvi2g709 274 SMART SynN_4 15 128 IPR006011 GO:0016020
Vvi2g709 274 PANTHER SYNTAXIN 6 273 IPR045242 -
Vvi2g709 274 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020|GO:0016192
Vvi2g709 274 SMART tSNARE_6 176 243 IPR000727 -
Vvi2g709 274 CDD SNARE_Qa 184 242 - -
Vvi2g709 274 Gene3D - 17 134 - -
Vvi2g709 274 CDD SynN 24 149 IPR006011 GO:0016020
Vvi2g709 274 Pfam SNARE domain 217 269 IPR000727 -
Vvi2g709 274 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Vvi2g709 274 Gene3D - 174 274 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g709 Vvi16g114 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g709 - K08488 vvi:100257399 452.21