Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g709 | ATGAGCTTTCAGGATCTCGAATCTGGGCGCCCTTTGGCTCAGTCCCGGCGAGATTACATCAATGCTAAGCAAGATCCGACGCAGGCCGTTGCTTCTGGCATTTTCCAGATCAATACCGCGGTTTCAACTTTTCAGCGACTCGTTAATACGCTTGGAACCCCCAAGGACACGTCAGAGCTACGGGAGAAGTTGCACAAGACGAGGCTACATATTGGGCAGTTAGTCAAGGATACCTCTGCTAAACTTAAGCAAGCTAGCGAAACAGATCATCATGCTGAAGTTAGTGCCAGCAAGAAGATTGCAGATGCTAAACTGGCAAAAGATTTTCAAGCAGTTTTAAAAGAGTTTCAGAAGGCTCAACGGCTGGCAGCAGAAAGGGAAACGGCATATACTCCTTTTGTTCCCCAGTCAGTTCTTCCTTCCAGCTATACGGCAAGTGAGATAGATGTAGGTCCAGATAAGAGTCCTGAACAACGTGCTCTTCTTGTGGAATCTAGAAGACAGGAGGTCTTGTTGTTGGACAATGAGATTGTCTTCAATGAGGCTATCATTGAAGAAAGGGAGCAGGGAATACAAGAAATCCAGCACCAAATTGGCGAGGTGAATGAGATTTTCAAAGATCTTGCTGTGCTGGTCCATGAGCAAGGAGTTATGATTGATGATATTGGCTCCAACATTGATGGTGCCCAGGCTGCAACAGCACAGGCAAAATCCCAACTTGCAAAAGCATCAAAGACCCAACGATCAAATTCATCTCTGACCTGCTTGCTGTTGGTGATATTTGGGATCATCCTCCTCATTGTGATCATCGTAATTGCAGCTTAA | 825 | 45.82 | MSFQDLESGRPLAQSRRDYINAKQDPTQAVASGIFQINTAVSTFQRLVNTLGTPKDTSELREKLHKTRLHIGQLVKDTSAKLKQASETDHHAEVSASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQSVLPSSYTASEIDVGPDKSPEQRALLVESRRQEVLLLDNEIVFNEAIIEEREQGIQEIQHQIGEVNEIFKDLAVLVHEQGVMIDDIGSNIDGAQAATAQAKSQLAKASKTQRSNSSLTCLLLVIFGIILLIVIIVIAA* | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8287288 | 8298042 | - | Vvi2g709 | Vvi2g709 | 783408 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g709 | 274 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 181 | 243 | IPR000727 | - | |
Vvi2g709 | 274 | ProSitePatterns | Syntaxin / epimorphin family signature. | 187 | 226 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Vvi2g709 | 274 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 6 | 273 | - | - | |
Vvi2g709 | 274 | SMART | SynN_4 | 15 | 128 | IPR006011 | GO:0016020 | |
Vvi2g709 | 274 | PANTHER | SYNTAXIN | 6 | 273 | IPR045242 | - | |
Vvi2g709 | 274 | SUPERFAMILY | t-snare proteins | 24 | 236 | IPR010989 | GO:0016020|GO:0016192 | |
Vvi2g709 | 274 | SMART | tSNARE_6 | 176 | 243 | IPR000727 | - | |
Vvi2g709 | 274 | CDD | SNARE_Qa | 184 | 242 | - | - | |
Vvi2g709 | 274 | Gene3D | - | 17 | 134 | - | - | |
Vvi2g709 | 274 | CDD | SynN | 24 | 149 | IPR006011 | GO:0016020 | |
Vvi2g709 | 274 | Pfam | SNARE domain | 217 | 269 | IPR000727 | - | |
Vvi2g709 | 274 | Pfam | Syntaxin-like protein | 31 | 130 | IPR006011 | GO:0016020 | |
Vvi2g709 | 274 | Gene3D | - | 174 | 274 | - | - |
Event-related genes

Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g709 | - | K08488 | vvi:100257399 | 452.21 |