Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g717 ATGGAGTTGTTCCCAGCACAACCAGACTTGTCTCTGCAAATCAGCCCACCAAACAGCAAGCCATCCTGTTTCGAGCTTTCGCTCTCGAATCCGAGGGCTACCTCTGAGTCTAACAACAGCAACCATTTTCATCTCCTTCAGAATGGCAACACCAATCTCCTCCATTCCTTTCAACAAAGCCAATACCCACATCATCATCACCATCAACACCAACTTCATCACCAGCTGTTTCAGCAGCAACAAGGATTCAGCCAAGAGCTTGGTTTCTTGAGACCCATAAGAGGAATTCCAGTCTACCAAAATCCTCCTTCTTTCCCATTTGCTCAGCAGCCCTTGGATTCTTCTATAGCTTCTTCCACTACGACCAACACTGCCGCCACCACCACTGGCTCAAGTCCTTTCCAGTCTCATCATCAAGGCCTAATTCGATCGAGATTTTTATCGAGGTTTCCGGCCAAGCGCAGCATGAGGGCGCCTCGGATGCGGTGGACTACGACCCTTCATGCTCGCTTTGTTCATGCTGTTGAGCTATTGGGTGGCCATGAAAGAGCTACACCCAAGTCTGTTCTTGAGCTCATGGATGTGAAAGATCTCACCTTGGCACATGTTAAATCTCATCTACAGATGTATCGAACTGTGAAGACTACTGATAGAGCAGCAGCTTCTTCAGGACAATCCGATGTGTACGAGAATGGGTCATCTGGAGATACTTCTGAGGATGTCATGTTTGACATTCAGAACCCGAGAAAATCTGAGCTATCAATTCAACAAGGAAGGCCAAATGTGCATCAAGAGAAGGATTACCATGGCCTCTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGCAAACAAAGGGATTCTGGAGGGAACACACCAACTCTTGAGGAGGACATGGATCCAAAGTGCTTAAGCTATGAAAGAATATCAGATGTAAGCTCATCAAACCTTTCAGGGACAAGCCCCAAGAAGCCCAATCTGGAGTTCACTTTGGGGAGGTCACATTGA 1008 47.22 MELFPAQPDLSLQISPPNSKPSCFELSLSNPRATSESNNSNHFHLLQNGNTNLLHSFQQSQYPHHHHHQHQLHHQLFQQQQGFSQELGFLRPIRGIPVYQNPPSFPFAQQPLDSSIASSTTTNTAATTTGSSPFQSHHQGLIRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYENGSSGDTSEDVMFDIQNPRKSELSIQQGRPNVHQEKDYHGLWSNSSREAWLHGKQRDSGGNTPTLEEDMDPKCLSYERISDVSSSNLSGTSPKKPNLEFTLGRSH* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8527797 8532588 - Vvi2g717 Vvi2g717 783416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g717 335 MobiDBLite consensus disorder prediction 282 301 - -
Vvi2g717 335 MobiDBLite consensus disorder prediction 116 138 - -
Vvi2g717 335 Pfam Myb-like DNA-binding domain 160 211 IPR001005 -
Vvi2g717 335 MobiDBLite consensus disorder prediction 311 327 - -
Vvi2g717 335 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 159 212 IPR006447 GO:0003677
Vvi2g717 335 Gene3D - 158 215 - -
Vvi2g717 335 MobiDBLite consensus disorder prediction 216 238 - -
Vvi2g717 335 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 332 - -
Vvi2g717 335 SUPERFAMILY Homeodomain-like 156 212 IPR009057 -
Vvi2g717 335 MobiDBLite consensus disorder prediction 311 335 - -
Vvi2g717 335 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 332 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14609 PF00249 Myb_DNA-binding 1.50E-05 CL0123 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g717 - - vvi:100250498 583.563