Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi2g717 | ATGGAGTTGTTCCCAGCACAACCAGACTTGTCTCTGCAAATCAGCCCACCAAACAGCAAGCCATCCTGTTTCGAGCTTTCGCTCTCGAATCCGAGGGCTACCTCTGAGTCTAACAACAGCAACCATTTTCATCTCCTTCAGAATGGCAACACCAATCTCCTCCATTCCTTTCAACAAAGCCAATACCCACATCATCATCACCATCAACACCAACTTCATCACCAGCTGTTTCAGCAGCAACAAGGATTCAGCCAAGAGCTTGGTTTCTTGAGACCCATAAGAGGAATTCCAGTCTACCAAAATCCTCCTTCTTTCCCATTTGCTCAGCAGCCCTTGGATTCTTCTATAGCTTCTTCCACTACGACCAACACTGCCGCCACCACCACTGGCTCAAGTCCTTTCCAGTCTCATCATCAAGGCCTAATTCGATCGAGATTTTTATCGAGGTTTCCGGCCAAGCGCAGCATGAGGGCGCCTCGGATGCGGTGGACTACGACCCTTCATGCTCGCTTTGTTCATGCTGTTGAGCTATTGGGTGGCCATGAAAGAGCTACACCCAAGTCTGTTCTTGAGCTCATGGATGTGAAAGATCTCACCTTGGCACATGTTAAATCTCATCTACAGATGTATCGAACTGTGAAGACTACTGATAGAGCAGCAGCTTCTTCAGGACAATCCGATGTGTACGAGAATGGGTCATCTGGAGATACTTCTGAGGATGTCATGTTTGACATTCAGAACCCGAGAAAATCTGAGCTATCAATTCAACAAGGAAGGCCAAATGTGCATCAAGAGAAGGATTACCATGGCCTCTGGAGCAATTCTTCAAGGGAAGCTTGGTTGCATGGCAAACAAAGGGATTCTGGAGGGAACACACCAACTCTTGAGGAGGACATGGATCCAAAGTGCTTAAGCTATGAAAGAATATCAGATGTAAGCTCATCAAACCTTTCAGGGACAAGCCCCAAGAAGCCCAATCTGGAGTTCACTTTGGGGAGGTCACATTGA | 1008 | 47.22 | MELFPAQPDLSLQISPPNSKPSCFELSLSNPRATSESNNSNHFHLLQNGNTNLLHSFQQSQYPHHHHHQHQLHHQLFQQQQGFSQELGFLRPIRGIPVYQNPPSFPFAQQPLDSSIASSTTTNTAATTTGSSPFQSHHQGLIRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYENGSSGDTSEDVMFDIQNPRKSELSIQQGRPNVHQEKDYHGLWSNSSREAWLHGKQRDSGGNTPTLEEDMDPKCLSYERISDVSSSNLSGTSPKKPNLEFTLGRSH* | 336 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 8527797 | 8532588 | - | Vvi2g717 | Vvi2g717 | 783416 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi2g717 | 335 | MobiDBLite | consensus disorder prediction | 282 | 301 | - | - | |
Vvi2g717 | 335 | MobiDBLite | consensus disorder prediction | 116 | 138 | - | - | |
Vvi2g717 | 335 | Pfam | Myb-like DNA-binding domain | 160 | 211 | IPR001005 | - | |
Vvi2g717 | 335 | MobiDBLite | consensus disorder prediction | 311 | 327 | - | - | |
Vvi2g717 | 335 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 159 | 212 | IPR006447 | GO:0003677 | |
Vvi2g717 | 335 | Gene3D | - | 158 | 215 | - | - | |
Vvi2g717 | 335 | MobiDBLite | consensus disorder prediction | 216 | 238 | - | - | |
Vvi2g717 | 335 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 1 | 332 | - | - | |
Vvi2g717 | 335 | SUPERFAMILY | Homeodomain-like | 156 | 212 | IPR009057 | - | |
Vvi2g717 | 335 | MobiDBLite | consensus disorder prediction | 311 | 335 | - | - | |
Vvi2g717 | 335 | PANTHER | TRANSCRIPTION FACTOR KAN2-RELATED | 1 | 332 | IPR044847 | GO:0000976|GO:0006355|GO:0010158 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
14609 | PF00249 | Myb_DNA-binding | 1.50E-05 | CL0123 | Vvi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi2g717 | - | - | vvi:100250498 | 583.563 |