Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g719 ATGACTAGAAGTGGAGGAGATGCTTTAAGACCTTCATCATCATGTGGTGTGAGATTACATGGTAATACAGATTCATTTTATAGATCCAGTGGAGCTCTAAATGAGAAGGATGCCTTTTCAAAGCGTAAGGTGGATAAGTTTGATACAACTGATCTAGAATGGATTGATAAAATTCCAGAATGCCCTGTTTACCGTCCAACAAAGGAGGATTTTGAGGACCCACTGGTTTATTTGCAAAAGATAGCTCCAGAAGCTTCAAAATATGGTATATGCAAAATTATTTCCCCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTATTGATGAAGGAGAAAATGGGTTTCAAGTTTACAACTAGAGTACAACCTCTTCGTCTTGCTGAGTGGGATAGTGATGACAAAGTCACCTTTTTCATGAGTGGAAGAAATTATACATTTCGTGATTTCGAGAAAATGGCGAACAAGGTTTTTGCTCGTAGATATTGTAGTGCTGGATGTCTTCCTTCCTCGTACTTGGAAAAAGAATTTTGGCATGAAATAGCTTGTGGAAAGACAGAAACAGTTGAATATGCATGTGATGTTGATGGTAGTGCCTTTTCATCTTCCCCCAATGATCAGCTCGGAAAAAGCAAATGGAATTTAAAGAAACTTTCCCGGCTGCCCAAGTCTATTTTACGTCTTCTAGAATCTGAAATTCCGGGAGTAACTGATCCCATGCTTTACATTGGAATGCTATTTAGTATGTTTGCTTGGCATGTGGAGGATCATTACTTGTATAGTATCAATTATCATCACTGTGGGGCATCGAAGACTTGGTATGGCATTCCAGGTCATGCGGCTTTGGAATTTGAAAAGGTGGTTAGGGAACATGTGTATACACGTGATATTCTATCAGCTGATGGAGAGGATGGAGCTTTTGATGTACTTTTGGGCAAAACTACTTTGTTTCCTCCAAATATTTTGTTAGAACATGATGTTCCTGTCTACAAGGCTGTGCAAAAGCCAGGGGAATTTGTAATCACCTTTCCTAGAGCATATCATGCTGGATTCAGTCATGGTTTCAATTGTGGTGAGGCAGTAAACTTTGCGATTGGTGATTGGTTCCCGCTAGGGGCAGTTGCTAGCCGACGATATGCACTTCTTAACAGGATGCCTCTCCTTCCTCATGAAGAACTCCTGTGCAAAGAAGCAATGCTTCTCTATACGAGTTTAGAACTTGAAGACCCAGATTATTCATCTACTGACTTGGCATCTCAACATTCCATGAAGCTTTCTTTTGTGAATCTGATGCGGTTCCAGCACAATGCTCGCTGGGCTTTAATGAAATCAAGGGCATGTACAGCAATATTTCCAAATTCTGGTGGAACTGTTCTCTGCAGCCTATGCAAACGTGACTGCTATGTTGCATATCTTAACTGCAACTGTTACTTGCATCCTGTGTGCCTTCGGCATGATGTTAACTCGCTTAAGTTACCATGTGGGAGCAATCATAATCATACCCTCTCTTTGAGGGAAGACATTTCAGAAATGGAAGCTGCAGCTAAGAGGTTTGAGCAGGAGGAAGAAATATTTCAGGAGATTCAACATGCTAAAAGTGATGATGACTTATCTCCTCTGTCAGATATGTTCTTAATTTCTGAAGAGGATGGATACTATCCTTATTGTGAGATAGACTTTGGACTGGTCCCTGGGATTCCAGTAGCTACCCAGGATGAGTCACCAGAGCTAGAGCAGAGTGCTCCTAGCCAGCCTCCTTTCAACAGTGGGAGAGAATATTTTAGAACTGAAATGTCAGATGCTTCCCTTTCTTGTGCTGCATCAACTCTTTGCTCTTTTCTAAAACCAGTTGAGAGCTCTTCCATACCCAGGAATGTACAGGGGGATGCTAAGTTTAACTTAGGAGATCATGTTTCTAGAAAGTTTTCTGAAGATATATCCCAAAATATACATGAATCTTGTCTATCCTCTCTATCATGTGATGAATGCTTGAGTACCCATCAAAATTTTCATGGATCAGAGGTTAAGCCTATCATAGATCAAGACAGTGATGATTCTGATTCAGAAATATTCAGGGTTAAACGCCGTTCTTCTGTTAAGGTGGAGAAAAGAAATGCAAATGATGCCTCATCTGTTAAGCATTTTGATCATCAGGGGCTTAAACGACTGAAGAAACTCCAGCCTCAAGGAAGATCGAAGCACTGA 2199 40.88 MTRSGGDALRPSSSCGVRLHGNTDSFYRSSGALNEKDAFSKRKVDKFDTTDLEWIDKIPECPVYRPTKEDFEDPLVYLQKIAPEASKYGICKIISPLSASVPAGVVLMKEKMGFKFTTRVQPLRLAEWDSDDKVTFFMSGRNYTFRDFEKMANKVFARRYCSAGCLPSSYLEKEFWHEIACGKTETVEYACDVDGSAFSSSPNDQLGKSKWNLKKLSRLPKSILRLLESEIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFEKVVREHVYTRDILSADGEDGAFDVLLGKTTLFPPNILLEHDVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAVASRRYALLNRMPLLPHEELLCKEAMLLYTSLELEDPDYSSTDLASQHSMKLSFVNLMRFQHNARWALMKSRACTAIFPNSGGTVLCSLCKRDCYVAYLNCNCYLHPVCLRHDVNSLKLPCGSNHNHTLSLREDISEMEAAAKRFEQEEEIFQEIQHAKSDDDLSPLSDMFLISEEDGYYPYCEIDFGLVPGIPVATQDESPELEQSAPSQPPFNSGREYFRTEMSDASLSCAASTLCSFLKPVESSSIPRNVQGDAKFNLGDHVSRKFSEDISQNIHESCLSSLSCDECLSTHQNFHGSEVKPIIDQDSDDSDSEIFRVKRRSSVKVEKRNANDASSVKHFDHQGLKRLKKLQPQGRSKH* 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8573733 8582220 - Vvi2g719 Vvi2g719 783418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g719 732 SMART JmjN_1 60 101 IPR003349 -
Vvi2g719 732 Gene3D Cupin 61 424 - -
Vvi2g719 732 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 731 - -
Vvi2g719 732 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 3 731 - -
Vvi2g719 732 MobiDBLite consensus disorder prediction 700 721 - -
Vvi2g719 732 SUPERFAMILY Clavaminate synthase-like 139 394 - -
Vvi2g719 732 ProSiteProfiles JmjC domain profile. 208 378 IPR003347 -
Vvi2g719 732 ProSiteProfiles JmjN domain profile. 61 102 IPR003349 -
Vvi2g719 732 SMART cupin_9 205 378 IPR003347 -
Vvi2g719 732 Pfam C5HC2 zinc finger 458 511 IPR004198 -
Vvi2g719 732 Pfam JmjC domain, hydroxylase 238 361 IPR003347 -
Vvi2g719 732 Pfam jmjN domain 62 94 IPR003349 -
Vvi2g719 732 MobiDBLite consensus disorder prediction 700 732 - -
Vvi2g719 732 Coils Coil 499 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g719 - - - vvi:100266131 1465.67
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g719 Vvi16g116 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g719 . . . . . . . . . Cmo16g01231 . . . . . Cpe14g00981 . . . . . . . . . . . . . . . Cone8ag0485 . . . Lsi07g01171 . . Cme06g02447 . Blo19g00246 . . Bpe08g00806 . . . . . . . Cma16g01181 . Car16g01115 . . . . . . . . . . . . . . . . . Csa03g00140 Chy06g02167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14610 PF02373 JmjC 4.20E-40 CL0029 Vvi TR