Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g724 ATGTACGGAGACTGCCAAGTTCTGACATCAATGGGAGGCAACGTAGTCTCTTCAGATTCCCTCTTTTCTTCGCCGATCCGAAACCCTAACTTCAACTTCATGTCATCCATGGGTGGCCCTTTCCATGCCTTCTCATCCATCATTCCCAAGGAAGAGAGTGGGCTTTTGAGAGGGAAAGATGAGATGGAGAGTGGGTCTGGAAGTGAGCATATCGAAGGAGTGTCAGGCAACGAGCAAGAGAACGAACAACAACCCAAGAAAAAACGCTACCACAGACACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTATTCAAGGAATGCCCACACCCAGATGACAAGCAGAGGATGAAACTCAGCCAAGAACTTGGCCTCAAACCACGCCAAGTCAAGTTTTGGTTCCAAAACCGGCGAACCCAGATGAAGGCCCAACAAGACCGTTCTGATAATGTGATACTAAGAGCCGAGAATGAGAACTTGAAGAATGAGAATTACCGGCTGCAAGCGGCCCTCCGAAGTGTTATCTGTCCTAACTGTGGTGGTCCAGCAATGCTGGGGGAGATCGCCTTTGATGAACAACAACTTCGCATCGAAAATGCTCGGCTTAAAGAAGAGTTGGATCGTGTTTGTTGCCTTGCTTCACGCTATGGTGGCCGGGCGATCCAAGCAATAGGACCGCCCCCTCCACTGCTTGCGCCTTCCTTGGATCTGGATATGAGTATCTATGCCAGGAATTTCCCAGAGCCTATGGCTAATTGCACCGACATGATTCCAGTGCCTTTAATGCCAGAAAGCTCTCACTTTCCAGAAGGCGGTCTCGTATTAGAGGAGGAAAAGTCTCTTGCGCTTGAACTTGCCATATCATCTGTTGATGAGCTTGTGAAGATGTGCCAGCTTGGGGAGCCTCTTTGGATCCGAAGCAATGAAAATGGGAAGGAAGTAATTAATGTTGAAGAGTATGGAAGAATGTTCCCATGGCCGATGAACCTCAAGCAGCACCCAGGTGAATTCAGGACAGAAGCTACCCGTGACAGCGCCGTAGTTATAATGAATAGCATCAATTTGGTAGATGCCTTCTTAGATGCTATGAAATGGATGGAGCTGTTTCCTTCCATTATTTCTAGAGCAAAAACTGTTCAAGTTCTTTCAGGCGTTTCTGGTCATGCAAATGGTTCCCTTCATCTGATGTATGCAGAATTGCAAGTTCTCTCACCTTTGGTTCCAACGCGTGAGACACATTTCCTTCGTTACTGCCAACAAAATGTCGATGAGGGAACTTGGGCAATTGTTGATTTTCCCATTGATAGCTTCAATGACAATCTCCAACCTTCCGTGCCTAGATACAGGAGACGACCCTCTGGCTGCATTATTCAAGATATGCCAAATGGATACTCGAGGGTAACATGGGTAGAACATGCTGACGTAGAGGAAAAACCTGTCCATCATATATTTCATCACTTTGTCAACAGCGGGATGGCATTTGGAGCTACACGCTGGCTTGCAGTCTTACAGCGACAATGCGAGAGGGTTGCAAGCCTCATGGCCAGAAATATATCAGACCTAGGAGTGATACCTTCTCCTGAGGCTCGGAAGAACCTGATGAATTTAGCACAAAGAATGATAAGAACATTCTCGGTTAACATCAGCACTTCCAGTGGTCAGTCTTGGACGGCTCTTTCTGATTCCTCTGATGACACTGTTAGGATAACCACAAGGAAAATCACTGAGCCTGGGCAACCCAATGGGGTTATCCTAAGTGCTGTATCCACTACTTGGCTGCCACATCCTCACTACCATGTTTTTGATCTCTTGAGAGATGAACGTAGGAGAGCTCAGCTTGATGTTCTTTCCAATGGGAATTCCTTACATGAAGTGGCACACATTGCCAATGGCTCTCATCCAGGAAACTGCATTTCTCTTCTTCGCATCAATGTGGCCAGCAATTCATCACAGAACGTAGAGCTCATGCTGCAAGAGAGCTGCACCGACCAGTCCGGCAGCCACGTGGTTTACACCACCATTGACGTGGATGCTATTCAGCTAGCCATGAGCGGTGAGGACCCCTCCTGCATTCCCCTGCTCCCAATGGGGTTTGCCATAGTCCCAGTGGTACCTAACAATGACTGCAACATCATGACCACCACCGACGACAACCCGATGCCGCCTTCAGGAGACGGAAATGGACACAACTCAGGCTGTCTGCTCACTGTAGGTCTACAAGTTCTGGCCAGCACAATCCCAACTGCAAAGCTCAACCTGTCGAGCGTCACGGCCATCAACAACCATTTATGCAACACAGTACATCAAATCAATGCTGCACTTAGCAGCATCTGCCCTGATAATAGCAGTAGCATGGTCGGCTCTTCCACAGAGCCAGCTGCTCCACCAAAGCAGTAG 2397 48.14 MYGDCQVLTSMGGNVVSSDSLFSSPIRNPNFNFMSSMGGPFHAFSSIIPKEESGLLRGKDEMESGSGSEHIEGVSGNEQENEQQPKKKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENENLKNENYRLQAALRSVICPNCGGPAMLGEIAFDEQQLRIENARLKEELDRVCCLASRYGGRAIQAIGPPPPLLAPSLDLDMSIYARNFPEPMANCTDMIPVPLMPESSHFPEGGLVLEEEKSLALELAISSVDELVKMCQLGEPLWIRSNENGKEVINVEEYGRMFPWPMNLKQHPGEFRTEATRDSAVVIMNSINLVDAFLDAMKWMELFPSIISRAKTVQVLSGVSGHANGSLHLMYAELQVLSPLVPTRETHFLRYCQQNVDEGTWAIVDFPIDSFNDNLQPSVPRYRRRPSGCIIQDMPNGYSRVTWVEHADVEEKPVHHIFHHFVNSGMAFGATRWLAVLQRQCERVASLMARNISDLGVIPSPEARKNLMNLAQRMIRTFSVNISTSSGQSWTALSDSSDDTVRITTRKITEPGQPNGVILSAVSTTWLPHPHYHVFDLLRDERRRAQLDVLSNGNSLHEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSHVVYTTIDVDAIQLAMSGEDPSCIPLLPMGFAIVPVVPNNDCNIMTTTDDNPMPPSGDGNGHNSGCLLTVGLQVLASTIPTAKLNLSSVTAINNHLCNTVHQINAALSSICPDNSSSMVGSSTEPAAPPKQ* 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8739163 8746005 + Vvi2g724 Vvi2g724 783423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g724 798 CDD homeodomain 87 145 IPR001356 GO:0003677
Vvi2g724 798 SUPERFAMILY Homeodomain-like 75 145 IPR009057 -
Vvi2g724 798 SUPERFAMILY Bet v1-like 276 511 - -
Vvi2g724 798 CDD START_ArGLABRA2_like 279 508 - -
Vvi2g724 798 PANTHER - 77 782 - -
Vvi2g724 798 Pfam START domain 285 509 IPR002913 GO:0008289
Vvi2g724 798 SUPERFAMILY Bet v1-like 548 771 - -
Vvi2g724 798 SMART START_1 284 509 IPR002913 GO:0008289
Vvi2g724 798 Coils Coil 143 170 - -
Vvi2g724 798 Pfam Homeodomain 87 142 IPR001356 GO:0003677
Vvi2g724 798 Gene3D - 73 155 - -
Vvi2g724 798 Gene3D - 334 512 IPR023393 -
Vvi2g724 798 ProSiteProfiles START domain profile. 275 512 IPR002913 GO:0008289
Vvi2g724 798 ProSiteProfiles 'Homeobox' domain profile. 84 144 IPR001356 GO:0003677
Vvi2g724 798 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 77 782 IPR042160 -
Vvi2g724 798 SMART HOX_1 85 148 IPR001356 GO:0003677
Vvi2g724 798 ProSitePatterns 'Homeobox' domain signature. 119 142 IPR017970 GO:0000981|GO:0006355
Vvi2g724 798 MobiDBLite consensus disorder prediction 57 95 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g724 Vvi15g561 ECH
Vvi2g724 Vvi16g616 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14611 PF01852 START 3.90E-45 CL0209 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g724 - - vvi:100253940 1597.79