Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g729 ATGGCGAGGTCGACCACCAAGGACGCTCAAGCCCTTTTCCACTCTCTCCGCTCCGCCTATTCTGCAACTCCTACGAATCTTAAGATCATTGATCTCTATGTGATTTTCGCAGTGTTAACAGCTATTATTCAGGTGGGCTACATGGCTATTGTTGGATCATTCCCATTCAACTCCTTCCTTTCAGGAGTACTTTCCTGTGTTGGGACTGCAGTCCTTGCTGTTTGTCTCCGCATTCAAGTTAACAAAGAAAACAAGGAATTCAAAGACCTACCACCAGAACGGGCTTTTGCTGACTTTGTTCTCTGCAATTTGGTGCTCCATTTGGTGATCATTAACTTCATGGGTTAA 348 44.83 MARSTTKDAQALFHSLRSAYSATPTNLKIIDLYVIFAVLTAIIQVGYMAIVGSFPFNSFLSGVLSCVGTAVLAVCLRIQVNKENKEFKDLPPERAFADFVLCNLVLHLVIINFMG* 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8849437 8856333 + Vvi2g729 Vvi2g729 783428

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g729 115 PIRSF DAD1_Ost2 1 115 IPR003038 GO:0008250|GO:0016021
Vvi2g729 115 Pfam DAD family 12 115 IPR003038 GO:0008250|GO:0016021
Vvi2g729 115 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT DAD1 3 115 - -
Vvi2g729 115 PANTHER DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT DAD1 3 115 IPR003038 GO:0008250|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g729 K12668 OST2, DAD1; oligosaccharyltransferase complex subunit epsilon - vvi:100265958 226.483
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g729 . . . . . . . . Cmo06g00635 Cmo16g01238 . . . . . Cpe14g00986 . . . . . . . . Cla10g00126 Cam10g0126 . . Clacu10g0131 Cmu10g0978 . Cone8ag0492 Cone12ag0490 . . Lsi07g01161 . . . Blo03g00884 . Bda07g00074 . . Bpe11g00314 . . . . . Cma06g00626 Cma16g01190 Car06g00561 Car16g01122 . . . . . . . . . . . . . . . . . Csa03g00134 Chy06g02173 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009636 1 2 1 1 1 1 2 0 0 1 1 1 2 0 1 2 1 2 2 0 1 1 1 1 1 1 1 2 1 1 33