Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g746 ATGGCGCTTTTAGAAGGGTCATTGAACACAGCCATTGGGGCGAGCCTTCTTCTGGTCATACGCCTACTACCTCTCTCACTTCCTCCACATGTTCCGCACATACTTCACCATATTAGGACATCCGGTTATACCCTGTTGCGGGATCCACACCACAACAAAGGGCTTGCCTTCACTGAGAAGGAGAGAGATGCCCATTACTTGCGTGGACTTTTGCCCCCAGCAGTCCTGAATCAGGATCTTCAGGAGAAGAGATTGATGCACAATCTTCGCCAATATAAAGTTCCATTGCAAAGGTACATGGCTATGATGGATTTTCAGGAGAGGAATGAAAGGTTGTTTTACAAGCTCCTTATTGATAATGTTGAGGAATTGCTCCCAGTTGTCTACACTCCAACAGTTGGTGAGGCTTGCCAGAAATACGGGAGCATTTTCAGGCGTCCTCAGAGTCTTTACATCATTGACTTTTTCATGGGAAAGATACTAGAAGTGCTGAAAAACTGGCCTGAAAGGAGTATTCAAGTTATTGTCGTAACTAATGGTGAACGTATTTTAGGGCTTGGGGATCTTGGCTGCCAAGGAATGGGAATACCTGTGGGAAAACTTTCTTTATATACAACACTAGGTGGACTACATCCTTCAGTATGCTTGCCTGTAACCATAGATGTTGGCACAAACAATGAGCAACTGTTGAAGGATGAGTTCTACATTGGACTCAAGCAAAGGAGGGCAACTGGGCAGGAATATGCCGAGCTTCTACATGAGCTAATGTGTGCAGTTAAACAGAACTATGGGGAGAGGGTCCTTATACATGTCAATTTTGCAAACCACAATGCATTTGAGCTGCTCGCAAAATATAGCAAAACTCATCTTGGTACAACATCTGTGGTCCTAGCAGAGCTAATTGCTTCTCTAAAACTAGTAGGCGGGAGCTTAGCTGAGCTTACTTTCCTGTTTCTTGGTGCTGGAGAGGCTGGAACTGGCATAGCAGAGCTCATAGCTCTTGAGATATCAAAACAGACAAAAGCTCCATTGGAAGAGACCCGTAAGAAGATTTGGCTTGTCAACTCAAAGGGACTGATTGTTCACTCTCGCATGGAATCACTTCAACACTTCAAGAAGCCTTGGGCTCATGAGCATGAACCTATTAGGGCACTTGTAGATGCAGTCCAGTCTATCAAGCCGACAGTGTTGATAGGATCACTTGGAATAGGGAAAACATTTACCAAGGAGGTGGTTGAGGCCATGACATCCTTCAATTTTTTAACCTTGCTTATTTGTATGACATTGTTGATTCTTTGA 1299 44.19 MALLEGSLNTAIGASLLLVIRLLPLSLPPHVPHILHHIRTSGYTLLRDPHHNKGLAFTEKERDAHYLRGLLPPAVLNQDLQEKRLMHNLRQYKVPLQRYMAMMDFQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQSLYIIDFFMGKILEVLKNWPERSIQVIVVTNGERILGLGDLGCQGMGIPVGKLSLYTTLGGLHPSVCLPVTIDVGTNNEQLLKDEFYIGLKQRRATGQEYAELLHELMCAVKQNYGERVLIHVNFANHNAFELLAKYSKTHLGTTSVVLAELIASLKLVGGSLAELTFLFLGAGEAGTGIAELIALEISKQTKAPLEETRKKIWLVNSKGLIVHSRMESLQHFKKPWAHEHEPIRALVDAVQSIKPTVLIGSLGIGKTFTKEVVEAMTSFNFLTLLICMTLLIL* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 9406775 9411582 - Vvi2g746 Vvi2g746 783445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g746 432 SMART malic_2 106 286 IPR012301 GO:0004471
Vvi2g746 432 PRINTS Malic enzyme signature 112 136 IPR001891 GO:0004470|GO:0004471
Vvi2g746 432 PRINTS Malic enzyme signature 172 201 IPR001891 GO:0004470|GO:0004471
Vvi2g746 432 PRINTS Malic enzyme signature 208 230 IPR001891 GO:0004470|GO:0004471
Vvi2g746 432 PRINTS Malic enzyme signature 316 332 IPR001891 GO:0004470|GO:0004471
Vvi2g746 432 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 291 418 IPR036291 -
Vvi2g746 432 Gene3D - 40 290 IPR037062 GO:0004471
Vvi2g746 432 Gene3D - 291 427 - -
Vvi2g746 432 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 30 287 IPR046346 -
Vvi2g746 432 PANTHER MALIC ENZYME-RELATED 40 424 - -
Vvi2g746 432 PANTHER MALIC ENZYME 40 424 - -
Vvi2g746 432 Pfam Malic enzyme, NAD binding domain 291 418 IPR012302 GO:0051287
Vvi2g746 432 SMART Malic_M_2 291 431 IPR012302 GO:0051287
Vvi2g746 432 PIRSF ME 24 422 IPR001891 GO:0004470|GO:0004471
Vvi2g746 432 Pfam Malic enzyme, N-terminal domain 106 285 IPR012301 GO:0004471
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g746 K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40] - vvi:100249166 690.263
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g746 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000336 4 5 1 2 4 4 7 4 4 4 4 4 7 4 3 7 4 5 8 4 4 4 4 4 2 4 4 7 9 4 135