Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g750 ATGATTAGGACATCAGTCCTTCATCAGACCCATGTCCTGGTATCACGAGAAGATCCACCTCAATCCCCAGAGTTGAGCTTCAAGTTGGGAGAGAAGGAATGTGTGTCCTTGTTGAAGAAATGCAGCAACATGGAGGAATTCAAGCAATCCCATGCCCGTATCCTCAAGTTGGGGCTCTTTGGGGATTCTTTCTGCGCAAGCAATCTTGTAGCTACTTGTGCTCTGTCAGATTGGGGCAGCATGGATTATGCATGCTCCATTTTCAGGCAAATGGATGAACTGGGTTCCTTTCAATTTAATACCATGATGAGGGGACATGTCAAGGATATGAACACGGAGGAAGCTCTGATTACCTATAAGGAGATGGCTGAGAGAGGGGTCAAGCCAGATAACTTTACTTACCCGACTCTGCTCAAGGCCTGCGCTCGGTTACCTGCAGTTGAGGAAGGAATGCAGGTGCACGCCCATATTTTAAAGCTTGGACTTGAAAATGATGTGTTTGTGCAGAACAGCTTGATCAGTATGTATGGGAAGTGTGGCGAAATAGGAGTTTGTTGTGCTGTTTTTGAGCAGATGAATGAACGGAGTGTTGCCTCTTGGAGTGCCCTTATTACAGCTCATGCAAGCTTGGGCATGTGGAGTGACTGCCTTAGGCTATTGGGGGATATGAGTAATGAGGGATATTGGAGGGCTGAAGAGAGCATTTTGGTCAGTGTTCTGTCTGCTTGTACCCATTTGGGTGCCCTTGATTTGGGAAGGTCTGTGCATGGCTTCTTACTGAGGAACGTGAGTGGACTCAATGTTATAGTTGAGACTTCTTTAATTGAAATGTATTTGAAGTGCGGGTCTCTATACAAAGGCATGTGTCTCTTCCAAAAGATGGCCAAGAAGAACAAGCTTTCCTATAGTGTGATGATATCAGGCCTCGCCATGCATGGCTATGGCCGAGAAGGCTTAAGGATTTTCACTGAAATGCTTGAACAAGGCCTTGAACCAGACGACATTGTCTACGTGGGAGTGCTAAACGCCTGCAGCCATGCTGGCCTTGTCCAGGAAGGTCTCCAGTGTTTCAACAGGATGAAGTTAGAGCATGGGATAGAACCTACAATTCAGCACTACGGATGCATGGTTGATCTCATGGGCCGAGCAGGGAAGATCGATGAAGCCCTGGAACTGATCAAGAGCATGCCCATGGAACCCAACGATGTTTTATGGCGTAGCCTTCTCAGTGCATCTAAGGTTCATAACAACTTGCAAGCAGGGGAGATTGCAGCCAAGCAATTATTCAAACTAGACTCTCAAAAAGCAAGTGATTATGTTGTATTATCTAACATGTATGCTCAAGCTCAAAGGTGGGAGGATGTGGCTAAGACTCGAACCAATATGTTCAGTAAGGGCCTGAGCCAGAGGCCCGGGTTCAGCTTGGTGGAGGTGAAGAGAAAGATGCACAGATTCGTATCGCAGGATGCAGGGCATCCCCAGAGTGAGAGCGTATACGAGATGCTGTACCAGATGGAGTGGCAGTTGAAGTTCGAAGGCTACTCCCCAGACACGACGCAGGTGTTGTGTGATGTAGATGAAGAAGAGAAGAAGCAGAGACTGAGTGGTCATAGTCAGAAGTTAGCAATTGCCTATGCACTCATACATACATCACAGGGATCTCCTATAAGAATAGTTAGAAACCTAAGGATGTGTAATGACTGTCACACATACACCAAACTAATTTCAATCATCTTTGATAGAGAAATTACTGTAAGGGACAGGCATCGGTTCCACCATTTTAAAGATGGGGCTTGCTCTTGTAGAGACTACTGGTGA 1818 46.31 MIRTSVLHQTHVLVSREDPPQSPELSFKLGEKECVSLLKKCSNMEEFKQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW* 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10045637 10047493 - Vvi2g750 Vvi2g750 783449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g750 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 368 IPR002885 -
Vvi2g750 605 Pfam DYW family of nucleic acid deaminases 513 605 IPR032867 GO:0008270
Vvi2g750 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Vvi2g750 605 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Vvi2g750 605 TIGRFAM PPR: pentatricopeptide repeat domain 99 130 IPR002885 -
Vvi2g750 605 TIGRFAM PPR: pentatricopeptide repeat domain 373 396 IPR002885 -
Vvi2g750 605 TIGRFAM PPR: pentatricopeptide repeat domain 301 333 IPR002885 -
Vvi2g750 605 TIGRFAM PPR: pentatricopeptide repeat domain 168 196 IPR002885 -
Vvi2g750 605 TIGRFAM PPR: pentatricopeptide repeat domain 199 227 IPR002885 -
Vvi2g750 605 PANTHER - 19 591 - -
Vvi2g750 605 Pfam PPR repeat family 98 143 IPR002885 -
Vvi2g750 605 Pfam Pentatricopeptide repeat domain 320 381 IPR002885 -
Vvi2g750 605 Pfam E motif 415 477 IPR046848 -
Vvi2g750 605 Gene3D Tetratricopeptide repeat domain 21 147 IPR011990 GO:0005515
Vvi2g750 605 Gene3D Tetratricopeptide repeat domain 148 267 IPR011990 GO:0005515
Vvi2g750 605 Gene3D Tetratricopeptide repeat domain 269 497 IPR011990 GO:0005515
Vvi2g750 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Vvi2g750 605 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Vvi2g750 605 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 19 591 - -
Vvi2g750 605 Pfam PPR repeat 170 196 IPR002885 -
Vvi2g750 605 Pfam PPR repeat 199 227 IPR002885 -
Vvi2g750 605 Pfam PPR repeat 272 297 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g750 - - - vvi:100247257 1229.16
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g750 Vvi15g546 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0499 . . . . . Chy04g00133 . . . . Bda09g00761 Bpe08g00802 . . . . . Cmo19g00226 . . . . . Cpe15g00184 Bhi05g00432 . . . Hepe06g1808 . Lcy12g1981 Cla09g01083 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000117 7 10 4 7 7 7 7 7 6 8 6 5 7 4 3 8 6 7 7 7 7 7 6 6 2 5 4 4 5 11 187