Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g752 ATGGAGGAGGGAGGGAATTGGAGAGAAATGGTGACCAAGATGCTGCCACCAGGAGCTTCTCTCCCAGACGAAGTATCCGATCTCGATTACTCCATAGCTATAGAGTACGAGGGCCCTCCCGTGTCCTACAAGCTCCCGACAGTCGAACCCCTTGATAGATCGGTCACAAAGTCCGAGGGTTTCTGGGAGCTCGGAGTGGTGAGTGAGGTGAAGAGGTGGGAAACGAAAGAGGCCTGTCTGGTTTGTGATGCCAAGTATTGCAGCAGTTGCTTGCTTAGGGCTATGGGGTCAATGCCTGAAGGGCGTAAGTGTGTGACCTGCATTGGCGAGCCAATTGATGAATCGAAGCGGTTGAAATTGGGAAAACATTCAAGGTTGTTATCTAGATTGCTCAGTCCTTTGGAAGTCAAGCAGATAATGAAAGCAGAGAAAGAGTGTTCTGCAAATCAGCTTCGACCTGAGCAATTGATTGTGAATGGATTCCCTTTGAAGCCAGAAGAAATGGCTGAATTACTTGGATGTGCTTTACCTCCCAGAAAGTTGAAGCCTGGTAGATATTGGTATGACAAGGAATCTGGCCTTTGGGGCAAGGAGGGAGAGAAACCTGATAGAATCATAAGTTCGAACTTGAGTTTCTCCGGGAAACTTAGTCCTGATGCGAGTAATGGAAACACTGAAGTTTACATCAATGGCCGAGAAATTACAAGACTGGAACTGAGAGTGCTAAGGCTGGCAAATGTACAGTGTCCACGGGACACACATTTCTGGGTCTATGATGATGGCCGTTATGAGGAGGAAGGTCAGAATAATATCAGGGGAAATATCTGGGAAAAGGCATCAACTCGGTTCGTCTGTGCCTTGTTTTCCTTGCCAGTGCCCCATGGTCAACTTCAAGGACTGAGAGATGAGGCTAGCAATTATACTACTGTCCCAAATTATCTAGAGCAGAAAAAGGTTCAGAAGCTTCTCCTAATTGGACTTCATGGCTCTGGAACCAGCACTATATTCAAGCAGGCCAAATTTTTGTATGGGAACAGGTTTAGTGCTGAAGAATTGCAGGATATTAAGTTAATGATTCAAAGCAACATGTACAGATATTTAAGCATTTTGCTTGATGGTCGGGAGCGCTTTGAGGAGGAAGCATTGTCAAAGCTGAAAGCATCAGATTCCCAGGATCAAATTGCTGAAGCAGGTGAAGAGCTTGAGTCCAGCGAAGCTGGTCAGTGTATCTACTCTATCAACCCCAGGTTGAAGCATTTCTCTGACTGGCTCCTGGATATCATAGCAACTGGAGATCTGGATGCTTTCTTCCCTGCAGCAACTCGGGAGTATGCTCCATTAGTTGAAGAGGTGTGGAAGGATCCTGCCGTACAGGAAACATATAAAAGAAAGGATGAGCTTCACTTTCTTCCAGATGTTGCTGAGTATTTCTTAAGCCGGGCTGTTGAGGTCTCAAGCAATGAATATGAACCTTCAGAGAGGGACATACTATATGCAGAAGGGGTCACACAAGGGAATGGTTTGGCTTTCATAGAATTCTACCTCGATGATCGTAGTCCAATGTCTGAAACCTACACAGACAATCAGGAAGCTCCATTGCAGCCTGTGACTAAATACCAACTTATAAGGGTAAATGGCAAGGGAATGAGCGAGGGTTGCAAGTGGGTGGAAATGTTTGAAGATGTTCGAGCTGTAGTGTTCTGTGTTTCCCTAAGTGACTATGATCAAATGTCAATTGGCACAGAGAACAGTGGGAGCGGAACCCAGCTTCAAAACAAGATGATGCAATGCAAGGAGCTTTTTGAGACGATGGTGAGGCACCCATGCTTCAAGGAGACTCCTTTTGTTTTGATACTGAACAAGTATGATGTATTTGAGGAGAAGGTGAATCGGGTACCTCTAAGTAGTTGTGAATGGTTCAACGATTTCAGTCCTGTCCGGCCCCATCACAACAACCAGTCTCTAGCCCACCAGGCTTACTACTACATTGCAATGAAGTTCAAAGACCTTTATGCTTCCCTCACAAGTCAAAAGCTATTTGTGGCCCAAGCTAGGGCAAGGGACAGAGTAACCATAGACGAGGCATTCAAGTATATAAAGGAGGTTCTGAAGTGGGATGATGAGAAAGAGGAGACCTACTACGGGGGAGTGGAGGATTCCTTTTATAGCACAGACATCAGCTCCTCGCCTTTTATTAGGCAAGAGTGA 2208 45.74 MEEGGNWREMVTKMLPPGASLPDEVSDLDYSIAIEYEGPPVSYKLPTVEPLDRSVTKSEGFWELGVVSEVKRWETKEACLVCDAKYCSSCLLRAMGSMPEGRKCVTCIGEPIDESKRLKLGKHSRLLSRLLSPLEVKQIMKAEKECSANQLRPEQLIVNGFPLKPEEMAELLGCALPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNLSFSGKLSPDASNGNTEVYINGREITRLELRVLRLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPVPHGQLQGLRDEASNYTTVPNYLEQKKVQKLLLIGLHGSGTSTIFKQAKFLYGNRFSAEELQDIKLMIQSNMYRYLSILLDGRERFEEEALSKLKASDSQDQIAEAGEELESSEAGQCIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWKDPAVQETYKRKDELHFLPDVAEYFLSRAVEVSSNEYEPSERDILYAEGVTQGNGLAFIEFYLDDRSPMSETYTDNQEAPLQPVTKYQLIRVNGKGMSEGCKWVEMFEDVRAVVFCVSLSDYDQMSIGTENSGSGTQLQNKMMQCKELFETMVRHPCFKETPFVLILNKYDVFEEKVNRVPLSSCEWFNDFSPVRPHHNNQSLAHQAYYYIAMKFKDLYASLTSQKLFVAQARARDRVTIDEAFKYIKEVLKWDDEKEETYYGGVEDSFYSTDISSSPFIRQE* 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10191222 10201433 + Vvi2g752 Vvi2g752 783451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g752 735 Gene3D - 349 500 IPR011025 GO:0007165
Vvi2g752 735 Gene3D - 516 711 IPR027417 -
Vvi2g752 735 SMART galpha_1 308 692 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g752 735 CDD G-alpha 320 706 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g752 735 ProSiteProfiles G-alpha domain profile. 318 714 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g752 735 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 71 731 - -
Vvi2g752 735 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 19 55 - -
Vvi2g752 735 Pfam G-protein alpha subunit 316 702 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g752 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 706 IPR027417 -
Vvi2g752 735 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 71 731 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g752 735 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 19 55 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g752 735 SUPERFAMILY Transducin (alpha subunit), insertion domain 347 499 IPR011025 GO:0007165
Vvi2g752 735 PRINTS Alpha G protein (transducin) signature 321 336 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g752 735 PRINTS Alpha G protein (transducin) signature 489 511 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g752 735 PRINTS Alpha G protein (transducin) signature 562 590 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Vvi2g752 735 PRINTS Alpha G protein (transducin) signature 615 624 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g752 - - - vvi:100248864 1318.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62