Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g762 ATGGCGGAGTCTGTTGTAACCTTTCTACTCAACAAGCTTGCAACCTTACCACAGCTGGAACAGTTGAAACTGCTGAGAGGGGTTTGGGGAGACGTTGAATACATCAGAGATGAACTAGAGCGCATGAAGGCCTTCCTGAGGGTGGCAGATGCAATGGAAGAGAGCGACGAGGAACTCAAAGTATGGGTTAGGCAGGTCAGTGATGTTGCTTATGACACTGAAGATGTTCTCGATGAATTCTCACATCACCTTGCAGTACATCCCCAACAGGAATGCTCCATTACTACTGCTGCTACGAACATTCATGCAAGAAATATCGAGCCTGGACTCAAGGTGGTTTCAGTTGTTGGGATGGGGGGACTAGGGAAGACTACCCTAGTGAAGAAAGTGTACCTACTCATTCTAGACGACTCCTGGACTTTGTTTTGTAAAAAGACATTTCCGGCTGACGGCGTTTTGTCAACAAAGGACGGCATCGATGAATGGGAGAGTGTGTATCGCAGCCTTGGTGCTGAGCTAGAAGGCAACAACAAGTTCGATAGCTTGAAGGAAATATTGTTACTCAGTTACAATGATCTGCCTTATTATCTAAAATCATGTTTCTTGTACATGAGCATCTTTCCTGAGGATTATCTGATAAGGCGGATGAGACTTATTCGGTTATGGATGGCTGAAGGGTTTGACATGGAGCTGGGTCAGCTGCTTTGGAATCTATTCAATTTGAGGTACCTGAGCTTGAGCAGAACCAAGGTGAAAGTGATCCCAAGCTCTATTGGGAAGCTTCAAAACCTTGAAACTCTGGATCTTAAACATTCCTATGTCACTGAGTTGCCAGCAGAGATCCTAATGCTCCATCAGCTCCGCCATCTCCTGCTTTATCAGGAGGGCAATGGTGTGATAAGTGAGGTGGGGCACCTGAAGCAACTGAGGAAGTTCCTGCAACGCCTGTGGCTACAGGGGCGTCTAGAGAAGATGCCACACTGGATCTCTTCACTTGACAACCTTGTCAAACTACGCCTGAGGTGGAGTCGCTTGAGGGACGATCCTCTTGTGCTCCTTCAAGCTTTGCCCAGTCTCGTGGAACTTCAACTTCGCCATGCGTATGAAGGTGAATCCTTATGCTTCAAGAGTGCAGGGTTCTTGAGGCTTAATATTCTGCATTTCCATAAACTAGAGAGACTGAGACGGGTGACAGTGGAGGATGGGGCGATGCCTCGTCTTGAAAGATTAGGAATTTTCTACTGTAAACTGCTGGAGAAGGTGCCCCAGGGCATTCAGTTCCTCACGCAACTGAAGTCCCTCGATCTTGCTGAAATGCCGAATGAATTTATTGGGAAGCTACAGGACAGAAGTGGGGAAGATTATTCTGTAATTGAGCACATCCCAGATGTTCGTTACACCTATTGGGTCAACAACCAATGGAAGCAATATCGCCTCTAG 1440 46.88 MAESVVTFLLNKLATLPQLEQLKLLRGVWGDVEYIRDELERMKAFLRVADAMEESDEELKVWVRQVSDVAYDTEDVLDEFSHHLAVHPQQECSITTAATNIHARNIEPGLKVVSVVGMGGLGKTTLVKKVYLLILDDSWTLFCKKTFPADGVLSTKDGIDEWESVYRSLGAELEGNNKFDSLKEILLLSYNDLPYYLKSCFLYMSIFPEDYLIRRMRLIRLWMAEGFDMELGQLLWNLFNLRYLSLSRTKVKVIPSSIGKLQNLETLDLKHSYVTELPAEILMLHQLRHLLLYQEGNGVISEVGHLKQLRKFLQRLWLQGRLEKMPHWISSLDNLVKLRLRWSRLRDDPLVLLQALPSLVELQLRHAYEGESLCFKSAGFLRLNILHFHKLERLRRVTVEDGAMPRLERLGIFYCKLLEKVPQGIQFLTQLKSLDLAEMPNEFIGKLQDRSGEDYSVIEHIPDVRYTYWVNNQWKQYRL* 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10508819 10511615 - Vvi2g762 Vvi2g762 783461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g762 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 203 IPR027417 -
Vvi2g762 479 Gene3D - 5 105 - -
Vvi2g762 479 PANTHER DISEASE RESISTANCE PROTEIN RP 157 228 IPR044974 GO:0006952
Vvi2g762 479 PANTHER DISEASE RESISTANCE PROTEIN RP 1 85 IPR044974 GO:0006952
Vvi2g762 479 PANTHER DISEASE RESISTANCE PROTEIN RP 240 286 IPR044974 GO:0006952
Vvi2g762 479 PANTHER DISEASE RESISTANCE PROTEIN RP 278 446 IPR044974 GO:0006952
Vvi2g762 479 Gene3D Ribonuclease Inhibitor 225 451 IPR032675 -
Vvi2g762 479 PANTHER OS08G0539900 PROTEIN 157 228 - -
Vvi2g762 479 PANTHER OS08G0539900 PROTEIN 240 286 - -
Vvi2g762 479 PANTHER OS08G0539900 PROTEIN 278 446 - -
Vvi2g762 479 PANTHER OS08G0539900 PROTEIN 1 85 - -
Vvi2g762 479 Pfam Rx N-terminal domain 5 90 IPR041118 -
Vvi2g762 479 PRINTS Disease resistance protein signature 112 127 - -
Vvi2g762 479 PRINTS Disease resistance protein signature 426 442 - -
Vvi2g762 479 SUPERFAMILY L domain-like 200 443 - -
Vvi2g762 479 CDD RX-CC_like 2 94 IPR038005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g762 K13457 RPM1, RPS3; disease resistance protein RPM1 - vvi:100854691 448.743
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g762 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .