Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g767 ATGGAACTTAACACCTTCCTCTTGCTTTGCATGCCACTCATCCTGTGCTTTTTCCTCCTCCAATTTCTGCGCCCATCATCCCACGCTACCAAGCTACCGCCTGGCCCAACTGGCCTCCCTATTTTGGGCTCCCTACTGGAAATTGGCAAACTTCCTCATCGCTCACTTGCAAGATTGGCCAAAATCCACGGCCCTCTCATCACTCTCCGCCTTGGCTCCATCACCACCGTCGTCGCCTCCTCTCCCCAGACAGCCAAACTAATTCTCCAAACACATGGCCAGAACTTCCTGGACCGTCCTGCTCCCGAGGCCCTCGACAGTCCTCAAGGCACAATCGGATGGATTCCTGCGGACCATGTATGGCGCAGCCGCCGCCGTGTTTGCATCAACCACTTGTTCACATCCCAGAGCCTGGACTCACTCCAACACCTTCGATACAAAAAGGTGGAACAACTTCTCCAACATATCCGTAAGCACTGTGTTTCCGGTACACCGGTGGATATCGGCCTACTCACCTCTGCCATCAACTTGAACCGCGACACTTTCTCATGTTATAAACGGCTTTATGAAATAGTTGGTGGTATAATCAAAAGCCGTATCAAGTGTAGAGCCTCCAATCCGATGAGCAGGAATGACGACTTCTTGGATGTGATTCTTGATCAGTGCCAAGAAGATGGCTCTGTTTTCAATTCTGATAATATCCAGGTTTTGATTGTGGAACTATTTTATGCTGGGAGTGATACATCTACCATAACAACTGAATGGGCAATGACTGAACTTCTTCGAAATCCTCGGCTGATGCAAAAGGTTCGGCAAGAACTTAGCGAAGTAATCGGGGCAGGTCAAATGGTTAGAGAATCAGATATGGACCGACTTCCATATTTTCAAGCTGTTGTGAAAGAGACGCTTAGACTCCATCCGGCTGGGCCCCTTCTGTTACCTTTTAAAGCAAAGAATGATGTGGAATTATGCGGTTTCACCATACCCAGTAACAGTCATGTCCTTGTCAATATGTGGGCTATTGCAAGAGATCCAGGTTATTGGGAGGATCCTTCATCCTTCCTTCCCGAAAGATTCTTGGGCTCTAAGATAGATTATAGAGGCCAAGATTACGAGTATATACCATTTGGAGCAGGTAGGCGAATCTGCCCAGGCATACCTCTTGCCATCAGAATGGTTCAACTAGTGTTAGCTTCCATTATCCACTCCTTTAACTGGAAGCTTCCTGAAGGAACTACTCCACTGACCATTGACATGCAAGAACAATGCGGAGCTACCTTGAAGAAGGCCATTCCTCTTTCTGCAATTCCATTTATCGAAGAAAATTAA 1329 47.4 MELNTFLLLCMPLILCFFLLQFLRPSSHATKLPPGPTGLPILGSLLEIGKLPHRSLARLAKIHGPLITLRLGSITTVVASSPQTAKLILQTHGQNFLDRPAPEALDSPQGTIGWIPADHVWRSRRRVCINHLFTSQSLDSLQHLRYKKVEQLLQHIRKHCVSGTPVDIGLLTSAINLNRDTFSCYKRLYEIVGGIIKSRIKCRASNPMSRNDDFLDVILDQCQEDGSVFNSDNIQVLIVELFYAGSDTSTITTEWAMTELLRNPRLMQKVRQELSEVIGAGQMVRESDMDRLPYFQAVVKETLRLHPAGPLLLPFKAKNDVELCGFTIPSNSHVLVNMWAIARDPGYWEDPSSFLPERFLGSKIDYRGQDYEYIPFGAGRRICPGIPLAIRMVQLVLASIIHSFNWKLPEGTTPLTIDMQEQCGATLKKAIPLSAIPFIEEN* 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10785022 10786852 - Vvi2g767 Vvi2g767 783466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g767 442 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 376 385 IPR017972 GO:0005506|GO:0016705
Vvi2g767 442 PRINTS P450 superfamily signature 244 261 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 PRINTS P450 superfamily signature 297 308 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 PRINTS P450 superfamily signature 374 383 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 Gene3D Cytochrome P450 21 174 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 Gene3D Cytochrome P450 175 434 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 Pfam Cytochrome P450 186 424 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 Pfam Cytochrome P450 33 173 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 179 438 - -
Vvi2g767 442 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 7 178 - -
Vvi2g767 442 PRINTS E-class P450 group I signature 60 79 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 PRINTS E-class P450 group I signature 84 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 PRINTS E-class P450 group I signature 296 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 PRINTS E-class P450 group I signature 337 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 PRINTS E-class P450 group I signature 373 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 PRINTS E-class P450 group I signature 383 406 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 SUPERFAMILY Cytochrome P450 28 433 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi2g767 442 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 7 178 - -
Vvi2g767 442 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 179 438 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g767 - - - vvi:100248986 850.121
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g767 Vvi15g526 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g767 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021165 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4