Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g77 ATGTCAACAAATGTGACTTGCCCACCACCCACCAAGGCCACATCAAATGGGGTGTTCCAGGGGGATAATCCCATTCATTTCGCCCTCCCTCTACTTATTGTGCAGATATGCCTTGTGCTTGTGGTTACTCGCTGTCTTGCTTTTCTTCTGAAGCCACTGCGACAGCCTCGCGTGATTGCAGAGATTGTTGGAGGAATATTACTTGGTCCTTCAGCTCTGGGTCGCAACAAACAGTATCTGCATTCGATTTTTCCACCTAAAAGCCTCACAGTGTTGGATACTCTGGCAAACCTTGGTCTTCTCTTCTTTCTATTCCTTGTAGGCTTGGAGTTGGATCTCAACTCCCTCCGTCGCACTGGAAAGAAAGCTCTTAGCATTGCTGTTGCAGGAATCAGCCTTCCTTTTGCTTTAGGAGTTGGTACATCTGTTGTCCTCAGAGCAACCATCTCCAAGGGTGTAGATGCAGGTCCATTTCTTGTATTCATGGGGGTGGCCCTCTCTATCACTGCCTTCCCTGTTTTGGCCCGTATCCTTGCAGAGCTAAAGCTTTTAACCACTGATGTTGGCCGAATGGCCATGTCTGCTGCTGCTGTCAATGATGTGGCTGCATGGATTCTACTTGCTCTTGCCATTGCTCTCTCTGGTACTGGCCGTTCCCCCATAGTAGCATTATGGGTGTTTTTGTGTGGATTTGGTTTTGTCCTTTGCTGTTCACTCATTGCCCCACGAATATTCAAATGGATGGCTCAGCGTTGCCCTGAGGGTGAGCCGGTGGATGAGATGTATGTATGTGCTACTTTAGCTGCTGTTTTGGCAGCTGGGTTTGTTACTGATGCCATTGGGATTCATGCGCTCTTTGGTGCTTTTGTGATGGGAATTCTCGTCCCCAAAGAAGGTCCTTTCGCAGGTGCTCTTGTGGAAAAAGTTGAGGACCTTGTATCTGGCCTCCTCCTTCCGTTGTACTTTGTCTCAAGCGGATTGAAGACTGATGTGGCCACCATTAGGGGGCTTCAATCATGGGGTCTCCTTGTTTTGGTCATATTTACAGCCTGTTTGGGGAAGATTGCAGGAACCGTTGCTGTCTCCCTTAGTTGGAGAATGCCTGTTCCGGAGGCTCTAGCTCTGGGGTTCCTAATGAACAGCAAGGGCTTGGTGGAGCTCATCGTCCTCAACATTGGTAAAGAGAGAAAGGTATTGAATGATCAAACATTTGCCATCATGGTTCTCATGGCTCTCTTCACAACCTTTATCACAACACCTCTAGTTATAGCAGTATACAAGCCGGCTAAAAGGACAAGTAAAGCCGATTACAATCACAGAACAATTGATAGAAAGAACCCCAATGCTGAACTTCGAATATTGGTTTGTTTCCAGAGTTCAAACAGCATTCCTACAATTATCAATCTCGTTGAGGCTTCACGGGGAACCGCGAAGAGGGAAGGACTTTGTGTCTATGCAATGCACCTCATGGAGCTGTCAGAGAGGTCATCTGCAATACTGATGGTTCACAAGGCAAGAAAGAATGGGCTACCCTTTTGGAACAAGGCCGTGCGCTCTGTGTCTATCAGGCCAATGACAGCAATTTCAGCCATGTCCAACATGCACGAGGACATCTGCACAAGTGCTGAAAGGAAAAGGGCAGCGATCATCATCCTCCCATTCCATAAGCACCAGAGATTTGATGGAACATTGGAGACTAGCAGAAGTGAATTCGGGGTGGTCAACAGAAAGGTCCTCGAGCATGCTCGATGCTCAGTTGGGATCCTAGTAGACCGCGACCTCGGTGGAACGGCCCAAGTATCTGCAAGCAACGTCTCCTCCATCATCACAGTCCCATTCTTTGGCGGCTGCGACGACCGTGAAGCCCTCTCGTACGGTGCACGCATGGCTGAGCATCCCGGCATTAAACAAGACGTCACACAACAGCTCAGTCAAATTGGAAGAAAGAGTCGTAAAAAATGCTGCAGAAGCCATCGAAATCATCCGCGAATACCACCGGTGCACCATGTTTGTTGTGGGCCGAACGCCAGAGGGTCAACTCGTTGCTGGATTGAGTCCACTGATCGAGTTCCCGGAACTGGGGCCGGTGGGCAGTTTGCTGACTTGTGGTGGCATTCCCACAGCTGCATCAGTGCTTGTTGTGCAGCAATATCAACCCAGGTCGTTTTCAAACTCAGATATTTCCTAAGAAGTGGTGGCTGGTGGTGGAAAACTGTTAAAAGCGCCATTAGCTTTCTACCTTCCGCAAGGAACATTCGGATTTCTTCTTTCCACATCAAGTCTAGTTTGCTTTCGTATAAACAAATAAAAGGCGTTGGATGTTAA 2325 48.34 MSTNVTCPPPTKATSNGVFQGDNPIHFALPLLIVQICLVLVVTRCLAFLLKPLRQPRVIAEIVGGILLGPSALGRNKQYLHSIFPPKSLTVLDTLANLGLLFFLFLVGLELDLNSLRRTGKKALSIAVAGISLPFALGVGTSVVLRATISKGVDAGPFLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGTGRSPIVALWVFLCGFGFVLCCSLIAPRIFKWMAQRCPEGEPVDEMYVCATLAAVLAAGFVTDAIGIHALFGAFVMGILVPKEGPFAGALVEKVEDLVSGLLLPLYFVSSGLKTDVATIRGLQSWGLLVLVIFTACLGKIAGTVAVSLSWRMPVPEALALGFLMNSKGLVELIVLNIGKERKVLNDQTFAIMVLMALFTTFITTPLVIAVYKPAKRTSKADYNHRTIDRKNPNAELRILVCFQSSNSIPTIINLVEASRGTAKREGLCVYAMHLMELSERSSAILMVHKARKNGLPFWNKAVRSVSIRPMTAISAMSNMHEDICTSAERKRAAIIILPFHKHQRFDGTLETSRSEFGVVNRKVLEHARCSVGILVDRDLGGTAQVSASNVSSIITVPFFGGCDDREALSYGARMAEHPGIKQDVTQQLSQIGRKSRKKCCRSHRNHPRIPPVHHVCCGPNARGSTRCWIESTDRVPGTGAGGQFADLWWHSHSCISACCAAISTQVVFKLRYFLRSGGWWWKTVKSAISFLPSARNIRISSFHIKSSLLSYKQIKGVGC* 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 809082 813431 - Vvi2g77 Vvi2g77 782776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g77 774 Gene3D - 31 436 IPR038770 -
Vvi2g77 774 Pfam Sodium/hydrogen exchanger family 38 421 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vvi2g77 774 PANTHER CATION/H + ANTIPORTER 6 645 - -
Vvi2g77 774 PANTHER CATION/H(+) ANTIPORTER 17 6 645 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g77 - - - vvi:100248364 1182.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g77 . Blo03g00235 . . . Bpe07g00084 . . . . . . . . . . . . . . . . . . Cla07g00713 Cam07g0769 Cec07g0837 Cco07g0811 Clacu07g0753 Cmu07g0762 Cre07g1116 . . . Cone9ag0826 . . . . . . . . . . . Bma12g00055 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00628 Chy07g01185 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi4g1313 . 11 793 Antiporter Super Family AT2G13620 74.8 0.0e+00 1176.4
Vvi2g78 . 5 515 Antiporter Super Family AT2G13620 51.7 5.9e-146 515.4
Vvi2g76 . 17 149 Antiporter Super Family AT2G13620 55.6 4.1e-38 157.1
Vvi8g701 . 76 844 Antiporter Super Family AT3G53720 67.3 5.5e-287 983.8
Vvi8g700 . 76 784 Antiporter Super Family AT3G53720 58.9 1.1e-234 810.1
Vvi5g290 . 82 740 Antiporter Super Family AT3G53720 50.1 2.0e-180 629.8
Vvi2g77 . 79 643 Antiporter Super Family AT3G53720 53.6 6.9e-165 578.2
Vvi2g78 . 79 512 Antiporter Super Family AT3G53720 58.9 1.4e-136 484.2
Vvi2g75 . 2 131 Antiporter Super Family AT3G53720 59.7 3.8e-38 157.1
Vvi5g290 . 1 763 Antiporter Super Family AT5G41610 62.0 9.2e-269 923.3
Vvi2g77 . 1 635 Antiporter Super Family AT5G41610 71.0 4.9e-262 901.0
Vvi2g74 . 1 665 Antiporter Super Family AT5G41610 61.7 1.2e-257 886.3
Vvi4g1313 . 11 784 Antiporter Super Family AT5G41610 50.6 3.2e-213 738.8
Vvi2g78 . 1 515 Antiporter Super Family AT5G41610 73.0 4.2e-213 738.4
Vvi8g701 . 8 821 Antiporter Super Family AT5G41610 50.7 2.6e-207 719.2
Vvi2g76 . 1 170 Antiporter Super Family AT5G41610 65.9 9.8e-53 205.7
Vvi2g75 . 2 141 Antiporter Super Family AT5G41610 66.5 1.2e-45 182.2
Vvi5g290 . 1 760 Antiporter Super Family AT4G23700 58.5 1.2e-252 869.8
Vvi2g77 . 1 641 Antiporter Super Family AT4G23700 68.7 6.1e-252 867.5
Vvi2g74 . 8 665 Antiporter Super Family AT4G23700 55.4 4.7e-228 788.1
Vvi2g78 . 6 515 Antiporter Super Family AT4G23700 71.8 3.9e-206 715.3
Vvi2g76 . 15 170 Antiporter Super Family AT4G23700 65.4 3.8e-52 203.8
Vvi2g75 . 2 140 Antiporter Super Family AT4G23700 64.7 5.5e-43 173.3
Vvi5g290 . 1 766 Antiporter Super Family AT3G17630 70.0 3.7e-302 1034.2
Vvi2g77 . 2 651 Antiporter Super Family AT3G17630 69.0 2.4e-253 872.1
Vvi2g74 . 1 644 Antiporter Super Family AT3G17630 56.4 1.6e-220 763.1
Vvi4g1313 . 17 776 Antiporter Super Family AT3G17630 51.6 1.6e-217 753.1
Vvi2g78 . 2 515 Antiporter Super Family AT3G17630 73.8 2.8e-209 725.7
Vvi8g701 . 8 823 Antiporter Super Family AT3G17630 51.7 1.8e-208 723.0
Vvi2g76 . 2 170 Antiporter Super Family AT3G17630 66.3 3.1e-51 200.7
Vvi2g75 . 2 142 Antiporter Super Family AT3G17630 61.9 8.5e-41 166.0
Vvi2g77 . 12 639 Antiporter Super Family AT1G64170 62.4 2.4e-216 749.2
Vvi5g290 . 4 739 Antiporter Super Family AT1G64170 53.5 4.2e-213 738.4
Vvi2g74 . 11 647 Antiporter Super Family AT1G64170 52.1 1.1e-197 687.2
Vvi2g78 . 12 515 Antiporter Super Family AT1G64170 63.8 1.2e-178 624.0
Vvi2g76 . 19 166 Antiporter Super Family AT1G64170 66.9 6.8e-46 183.0
Vvi2g75 . 1 137 Antiporter Super Family AT1G64170 57.5 7.6e-37 152.9
Vvi4g1313 . 11 793 Antiporter Super Family AT2G13620 74.8 0.0e+00 1176.4
Vvi2g78 . 5 515 Antiporter Super Family AT2G13620 51.7 5.9e-146 515.4
Vvi2g76 . 17 149 Antiporter Super Family AT2G13620 55.6 4.1e-38 157.1
Vvi2g77 . 12 639 Antiporter Super Family AT1G64170 62.4 2.4e-216 749.2
Vvi5g290 . 4 739 Antiporter Super Family AT1G64170 53.5 4.2e-213 738.4
Vvi2g74 . 11 647 Antiporter Super Family AT1G64170 52.1 1.1e-197 687.2
Vvi2g78 . 12 515 Antiporter Super Family AT1G64170 63.8 1.2e-178 624.0
Vvi2g76 . 19 166 Antiporter Super Family AT1G64170 66.9 6.8e-46 183.0
Vvi2g75 . 1 137 Antiporter Super Family AT1G64170 57.5 7.6e-37 152.9
Vvi5g290 . 1 760 Antiporter Super Family AT4G23700 58.5 1.2e-252 869.8
Vvi2g77 . 1 641 Antiporter Super Family AT4G23700 68.7 6.1e-252 867.5
Vvi2g74 . 8 665 Antiporter Super Family AT4G23700 55.4 4.7e-228 788.1
Vvi2g78 . 6 515 Antiporter Super Family AT4G23700 71.8 3.9e-206 715.3
Vvi2g76 . 15 170 Antiporter Super Family AT4G23700 65.4 3.8e-52 203.8
Vvi2g75 . 2 140 Antiporter Super Family AT4G23700 64.7 5.5e-43 173.3
Vvi5g290 . 1 763 Antiporter Super Family AT5G41610 62.0 9.2e-269 923.3
Vvi2g77 . 1 635 Antiporter Super Family AT5G41610 71.0 4.9e-262 901.0
Vvi2g74 . 1 665 Antiporter Super Family AT5G41610 61.7 1.2e-257 886.3
Vvi4g1313 . 11 784 Antiporter Super Family AT5G41610 50.6 3.2e-213 738.8
Vvi2g78 . 1 515 Antiporter Super Family AT5G41610 73.0 4.2e-213 738.4
Vvi8g701 . 8 821 Antiporter Super Family AT5G41610 50.7 2.6e-207 719.2
Vvi2g76 . 1 170 Antiporter Super Family AT5G41610 65.9 9.8e-53 205.7
Vvi2g75 . 2 141 Antiporter Super Family AT5G41610 66.5 1.2e-45 182.2
Vvi5g290 . 1 766 Antiporter Super Family AT3G17630 70.0 3.7e-302 1034.2
Vvi2g77 . 2 651 Antiporter Super Family AT3G17630 69.0 2.4e-253 872.1
Vvi2g74 . 1 644 Antiporter Super Family AT3G17630 56.4 1.6e-220 763.1
Vvi4g1313 . 17 776 Antiporter Super Family AT3G17630 51.6 1.6e-217 753.1
Vvi2g78 . 2 515 Antiporter Super Family AT3G17630 73.8 2.8e-209 725.7
Vvi8g701 . 8 823 Antiporter Super Family AT3G17630 51.7 1.8e-208 723.0
Vvi2g76 . 2 170 Antiporter Super Family AT3G17630 66.3 3.1e-51 200.7
Vvi2g75 . 2 142 Antiporter Super Family AT3G17630 61.9 8.5e-41 166.0
Vvi8g701 . 76 844 Antiporter Super Family AT3G53720 67.3 5.5e-287 983.8
Vvi8g700 . 76 784 Antiporter Super Family AT3G53720 58.9 1.1e-234 810.1
Vvi5g290 . 82 740 Antiporter Super Family AT3G53720 50.1 2.0e-180 629.8
Vvi2g77 . 79 643 Antiporter Super Family AT3G53720 53.6 6.9e-165 578.2
Vvi2g78 . 79 512 Antiporter Super Family AT3G53720 58.9 1.4e-136 484.2
Vvi2g75 . 2 131 Antiporter Super Family AT3G53720 59.7 3.8e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111