Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g779 ATGTATGAGCAGGTTAAAGCTATCAAGGATGGAATTGCTGTTGAGAAGCCCATCTACAACCATGTCACCGGCCTCTTGGATCCTCCCGAGACCATCAAGCCTCCCAAGATCCTCGTCATTGAAGGTTTGCACCCCATGTACGATGCTCGCGTAAGAGACCTCTTGGACTTCAGTATCTATTTGGACATTAGCAATGAGGTTAAATTTGCTTGGAAAATTCAGAGGGACATGGCTGAGCGAGGACATAGTCTTGAAAGCATCAAAGCCAGTATTGAAGCCCGAAAGCCTGATTTTGATGCTTATATTGATCCACAGAAGCAGTACGCGGATGCAGTGATAGAAGTGTTACCCACTCAGCTCATTCCCGATGACAACGAAGGCAAGGTTTTGAGAGTTCGATTGATCATGAAAGAAGGGGTGACGTATTTCAGCCCGGTTTACTTGTTCGATGAAGGCTCCACCATCTCATGGATCCCCTGTGGGAGGAAGCTTACATGCTCTTACCCTGGCATCAACTTCTCCTACGGCCCCGACACTTACTACGGCCATGAGGTTTCTGTTTTGGAGATGGATGGACAATTTGACAGATTAGATGAGCTCATTTATGTTGAAAGCCATCTGAGCAACATCTCGACCAAGTTCTACGGTGAAATCACCCAACAGTTGTTGAAGCACTCCGATTTCCCAGGAAGTAACAACGGAACTGGCCTCTTCCAAACCATAGTTGGGTTGAAGATAAGAGACCTCTTTGAGCAAATCGTCGCCAGCCGGGCTGCAACTCCCTTAGAAGCAACAAAAGCCTAA 804 47.01 MYEQVKAIKDGIAVEKPIYNHVTGLLDPPETIKPPKILVIEGLHPMYDARVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKVLRVRLIMKEGVTYFSPVYLFDEGSTISWIPCGRKLTCSYPGINFSYGPDTYYGHEVSVLEMDGQFDRLDELIYVESHLSNISTKFYGEITQQLLKHSDFPGSNNGTGLFQTIVGLKIRDLFEQIVASRAATPLEATKA* 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12236134 12239970 + Vvi2g779 Vvi2g779 783478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g779 267 PANTHER URIDINE KINASE 1 267 - -
Vvi2g779 267 PANTHER PHOSPHORIBULOKINASE 1 267 - -
Vvi2g779 267 ProSitePatterns Phosphoribulokinase signature. 72 85 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vvi2g779 267 Gene3D - 1 149 IPR027417 -
Vvi2g779 267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 192 IPR027417 -
Vvi2g779 267 CDD PRK 1 212 - -
Vvi2g779 267 Pfam Phosphoribulokinase / Uridine kinase family 1 121 IPR006083 GO:0005524|GO:0016301
Vvi2g779 267 PRINTS Phosphoribulokinase family signature 37 55 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vvi2g779 267 PRINTS Phosphoribulokinase family signature 72 89 IPR006082 GO:0005524|GO:0005975|GO:0008974
Vvi2g779 267 PRINTS Phosphoribulokinase family signature 90 113 IPR006082 GO:0005524|GO:0005975|GO:0008974
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g779 K00855 PRK, prkB; phosphoribulokinase [EC:2.7.1.19] - vvi:100244092 540.421
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g779 Vvi16g137 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g779 . . . . . . Bma07g00905 . . Cmo16g01248 Cma02g01644 . Car02g01402 . . . Cpe05g00149 . . . . . . . . . . . . . . . . . . Lsi07g01150 . . Cme06g02430 Blo03g00891 . Bda07g00068 . . Bpe11g00307 . . Sed01g4150 Cmo02g01690 Cmo19g00223 . Cma16g01201 . Car16g01131 . Cpe15g00181 Bhi05g00425 Tan07g2037 Cmetu06g0105 Lac11g2460 Hepe06g0978 . Lcy12g1984 . . . . . . . . Csa03g00122 Chy06g02183 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002153 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 64