Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g786 ATGGCAACACCCTTGAATGCCTGTGCCTCCTCACAAAACCAAGCCACCAACACCCAAAGAGCCTCTGATAACACACACCCAAATGGCCACCCTCACTGGTTTTCACCAGAAACAGGCATCTACAGCAGCACATATCCTTCCCTACCCATTCCATCAGACCCACATCTTGATATAGTCTCCTTCATTTTCTCAAAAAACCATAATGGGGTCTCAGCTCTCACTGATTACTCGTCCGGGTTTTCCATATCTTACTCACAACTGCACCCACTGGTGAAATCCATGGCCTCTGGTCTGCACCAGATGGGCTTTTCACAAGGTGATGTAATTTTGCTTCTGTTGCCTAATTCTATCTACTTTCCTGTTATTTTCTTGGCTGTTCTGTCTCTTGGTGGAATTGCAACAACCATGAATCCTCTAAGCAGTCTCACTGAGATCAGGAAACAAACAGTTGGTTGTAGTTTGAGTCTGGCCTTTACTGTGCCTGAGACATCGGAGAAACTTGGAGCATTAGGTGTTCCTGTCATTGGAGTACCAGAAAATGGGAGTTTCAATTCCAAATCCAAGGAATTTTCTACTTTCCATTGGCTAATTTCTGGTGACCCGGATTGTTGTCCTAGGCCTGTGATTAATCAGCATGATGTGGCAGCAATAATGTACTCGTCTGGTACTACGGGTTCAACTAAAGCTGTTGTTCTAACGCATGGGAATTTCATAGCTATGGTTGAGACTTTTGTTCGATTTGAAGCTTCGCTGTATGAGAACTCGGGGTCGGAGAATGTTTACTTGGCTGTTTTACCAATGTTCCATATTTATGGGCTGTCACTTTTTGTGACGGGGTTGATATCATTGGGGTCTGCTATTGTTGTGATGAGGAAGTTCGATGCTAATGAGATGGTGAAAGCCATTGATCGATACAGAGTAACGCATTTTCCAGTCGTCCCACCAGTATTGATGGCATTGATAAAGAGTGCTAGGGCTGCTGGAGCTGGCTGTTTTGGGAGTTTGAAACAGGTTTGTTGTGGGGCTGCTCCTTTGACTCAGAAAAGCATACAGGAATTTGTGCAGACTCTGTCACATGTTGATTTGATTCAGGGTTATGGAATGACTGAGTCCACTGCAGTAGGAACTCGTGGGTTCAATACAAAGAAGCTTCGGAATTATTCTTCAATAGGCCTTTTGGCTCCAAACATGCGAGCCAAAGTGGTGGATTTGAGCAGTGGTTCTCTATTGCCTCCTGGAAACTGTGGGGAGCTATGGCTACAAGGACCTGGTATAATGAAAGGATATTTAAATGATGAGGAAGCAACGATTTCAACAATTGATAAAGAAGGTTGGCTACACACTGGAGACATTGTTTCTTTTGATCAAGATGGGTACTTGTATATGTTTTCTCGGATAAAAGAGATTATCAAATACAAGGGTTTTCAGATTGCTCCTGTTGATTTGGAGTCTATATTGATATCACATCCAGAAATAAGTGATGCTGCGGTGGCTGGGGTTGGGGATGAGGAGGCTGGGGAGGTACCAGTTGCATTTGTAGTCAAGAGACCTGGAAGTGCTCTTTCTCAGGCAGCTATTATTAACTATGTCGAGAAACAGGTTGCACCATACAAGAAGGTGAGAAAGGTTATATTCACACACCCCATACCCAAGTCTGCAGCTGGAAAGATCCTCAGAAGGGAACTAAAGCACTTATTTATGATTTCTAGAATTTAA 1716 43.59 MATPLNACASSQNQATNTQRASDNTHPNGHPHWFSPETGIYSSTYPSLPIPSDPHLDIVSFIFSKNHNGVSALTDYSSGFSISYSQLHPLVKSMASGLHQMGFSQGDVILLLLPNSIYFPVIFLAVLSLGGIATTMNPLSSLTEIRKQTVGCSLSLAFTVPETSEKLGALGVPVIGVPENGSFNSKSKEFSTFHWLISGDPDCCPRPVINQHDVAAIMYSSGTTGSTKAVVLTHGNFIAMVETFVRFEASLYENSGSENVYLAVLPMFHIYGLSLFVTGLISLGSAIVVMRKFDANEMVKAIDRYRVTHFPVVPPVLMALIKSARAAGAGCFGSLKQVCCGAAPLTQKSIQEFVQTLSHVDLIQGYGMTESTAVGTRGFNTKKLRNYSSIGLLAPNMRAKVVDLSSGSLLPPGNCGELWLQGPGIMKGYLNDEEATISTIDKEGWLHTGDIVSFDQDGYLYMFSRIKEIIKYKGFQIAPVDLESILISHPEISDAAVAGVGDEEAGEVPVAFVVKRPGSALSQAAIINYVEKQVAPYKKVRKVIFTHPIPKSAAGKILRRELKHLFMISRI* 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12710239 12715877 - Vvi2g786 Vvi2g786 783485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g786 571 Pfam AMP-binding enzyme C-terminal domain 482 556 IPR025110 -
Vvi2g786 571 Gene3D - 468 568 IPR045851 -
Vvi2g786 571 CDD 4CL 50 562 - -
Vvi2g786 571 Pfam AMP-binding enzyme 67 472 IPR000873 -
Vvi2g786 571 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 25 565 - -
Vvi2g786 571 MobiDBLite consensus disorder prediction 1 33 - -
Vvi2g786 571 Gene3D - 39 467 IPR042099 -
Vvi2g786 571 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 25 565 - -
Vvi2g786 571 SUPERFAMILY Acetyl-CoA synthetase-like 68 566 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g786 K01904 - vvi:100261471 1125.92