Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g79 ATGGAAGGGGAAACATCCTGGATTGACTACCAATTCGATGATAATAGAACACAAGTGCTTGATTTGCGAGTGTTTGATTTGTACCCGGAGCTCAGTGATGATGATAAGAGTGATAACAATCTCGTTTCAATTGATTCAATCCTTCCTGATGATTTACTTGAACGAATTCTAGCGTTGCTGCCGATAGCTAGTATTTTCAAGGCAGCTGCTGTAAGTAGAAAATGGTGTGAGATAGTGCACTCTAGGAGATTCTTATGCAATGCTTCAAGGGTCTTGGTGCCGAAACCTTGGTACTTCATGTTCACCGGCTCTGATGAGCCCACTGGTTATGCTTATGACCCCATGGATCGGAAATGGTATAGCTTTCAACTCCCCCTTATTGAGACATCCAGCTGGTTTATTGCTTCATCATATGGTTTAGTTTGCTTCATGGACAATGACAGCAGGAGTGAGCTATATGTTTGCAACCTAATTACCAAAGACCACAGGAAACTTGTGGAGCCTCCAGGCCAAAAATTCTCTGATTATAGTGCTCTTGCAATATCGGTGGACAGTCTATCACACAGCTACACTGTTGCAGTTGTAAAATCTAAGCAAATCCCTAATAATTTTGTTCAGTGGAATCTTTCAATCCATTGTTATTCTTCAGAAACTGGGATGTGGGTATCTCCTGTTATGGAACTGATGACAGGCTGGAGAGGAGGAGATGACAGTGTGATTTGTGATGGGGTATTGTACTTCCTGGTTCACTCTACAACTTTGACCGGGAACCAACATGCTTTGGCCACTTTTAATCTTTCTAGCAGACCTTCCAATGGTTTGTCAATTGATAGTTTTATCCCAGTACCTTGCTCCCTCACCTGTGGCAGGCTGATGAACATGAATGGTAAGCTTGTAATGGTGGGAGGAATTGGGAAACACGATCGGCCAGGTATAATTAAGGGGATTGGCATCTGGGCTCTCAAGGGGAGGGACTGGGAGGAGGTTTCTCGCATGCCTCACAGGTTTTTTCAAGGATTTGGTGAATTTGATGATGTTTTTGCAAGCAGTGGCTTTAATAGTCTTGTATACATTCAGAGCTATGGAGCCCCTGCTCTGCTTGTGTTTGACATGAACTTGAGACAGTGGAAGTGGTCACAAAAATGTCCTGTGACAAAGAGATTCCCCCTTCAGCTTTTTACTGGTTTTTGCTTTGAACCTCGGCTTGAAATTGCTCCCTAA 1221 43.33 MEGETSWIDYQFDDNRTQVLDLRVFDLYPELSDDDKSDNNLVSIDSILPDDLLERILALLPIASIFKAAAVSRKWCEIVHSRRFLCNASRVLVPKPWYFMFTGSDEPTGYAYDPMDRKWYSFQLPLIETSSWFIASSYGLVCFMDNDSRSELYVCNLITKDHRKLVEPPGQKFSDYSALAISVDSLSHSYTVAVVKSKQIPNNFVQWNLSIHCYSSETGMWVSPVMELMTGWRGGDDSVICDGVLYFLVHSTTLTGNQHALATFNLSSRPSNGLSIDSFIPVPCSLTCGRLMNMNGKLVMVGGIGKHDRPGIIKGIGIWALKGRDWEEVSRMPHRFFQGFGEFDDVFASSGFNSLVYIQSYGAPALLVFDMNLRQWKWSQKCPVTKRFPLQLFTGFCFEPRLEIAP* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 835066 838279 + Vvi2g79 Vvi2g79 782778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g79 406 SMART fbox_2 48 88 IPR001810 GO:0005515
Vvi2g79 406 Gene3D - 36 91 - -
Vvi2g79 406 SUPERFAMILY F-box domain 46 120 IPR036047 GO:0005515
Vvi2g79 406 PANTHER F-BOX FAMILY PROTEIN 1 406 IPR045048 -
Vvi2g79 406 Pfam F-box domain 47 86 IPR001810 GO:0005515
Vvi2g79 406 SUPERFAMILY Galactose oxidase, central domain 109 384 IPR011043 -
Vvi2g79 406 PANTHER BNAA09G39300D PROTEIN 1 406 - -
Vvi2g79 406 ProSiteProfiles F-box domain profile. 42 88 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g79 - - - vvi:109121643 845.499
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g79 Vvi15g778 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g79 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005123 2 2 1 3 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41