Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g791 ATGGCATCCCAATTAATCCGTGAATGGACTGGGATTCAACAATTCCCCCCTGTTACACAGACCAAATTGATTGAACTGCTGGGAAAACTAAAGCAGGAGAATGTGAGCACATTGACAATCCTTGTAATGGGGAAAGGTGGTGTTGGAAAATCTTCAACTGTAAACTCAATCATAGGGGAAAGAGCAGTTGCTGTCAGTGCTTTTCAGTCAGAAGGACCAAGGCCTGTTATGGTTTCACGGTCCCGAGCAGGATTCACATTGAACATTATTGACACACCAGGGCTTGTAGAAGGGGGATATGTCAATGATCAGGCACTTGAGATCATAAAACGATTTCTTCTAAACAAGACCATAGATGTTCTACTCTATGTGGACCGATTAGATGCATATAGGGTAGACAACTTGGATAGGCAGGTTGTCAAAGCTATAACTGATAGTTTTGGCAAAGAAATATGGCGAAGAGGTGTGGTTGTCCTTACACATGCTCAACTCTCTCCACCAGATGGGTTAAATTATGAGGATTTCTTCTCCAAAAGATCAGAGGCTCTCATGAAAGTTGTTCGATCGGGAGCTCGGTTAAGGAAGCAGGATATCCAGGATTCTGGCATTCCTGTTGTTCTGGTCGAGAATAGTGGGAGATGTCATAAGAATGAAAGTGATGAAAAGATTCTGCCAAATGGAACTGCTTGGATCCCCAATTTAGTCAAAACAATCACAGATGCTGTGTCAAATGGAAGCAAGGGTATTTTGGTTGACAAGAAGTTGATTGAAGGGCCGAACCCAAACGAGAGAGGAAAGTTACTCATTCCTTTTATTTTAGCCTTCCAATACTTCTTTATCGTGAAACGAATTCAACGGGCAATCAAAAGTGATATGGCAAAGGAGAGAAAAGCTCCATGGGAGTCGCGGGAGGCCAACCGTTATGAACCTTGA 933 42.87 MASQLIREWTGIQQFPPVTQTKLIELLGKLKQENVSTLTILVMGKGGVGKSSTVNSIIGERAVAVSAFQSEGPRPVMVSRSRAGFTLNIIDTPGLVEGGYVNDQALEIIKRFLLNKTIDVLLYVDRLDAYRVDNLDRQVVKAITDSFGKEIWRRGVVVLTHAQLSPPDGLNYEDFFSKRSEALMKVVRSGARLRKQDIQDSGIPVVLVENSGRCHKNESDEKILPNGTAWIPNLVKTITDAVSNGSKGILVDKKLIEGPNPNERGKLLIPFILAFQYFFIVKRIQRAIKSDMAKERKAPWESREANRYEP* 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13004263 13012644 - Vvi2g791 Vvi2g791 783490

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g791 310 Gene3D - 2 267 IPR027417 -
Vvi2g791 310 CDD Toc34_like 7 252 - -
Vvi2g791 310 Pfam AIG1 family 38 228 IPR006703 GO:0005525
Vvi2g791 310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 257 IPR027417 -
Vvi2g791 310 PIRSF Toc33/toc34 1 309 IPR005688 GO:0006886|GO:0009707|GO:0015450
Vvi2g791 310 TIGRFAM 3a0901s02IAP34: GTP-binding protein 1 306 IPR005688 GO:0006886|GO:0009707|GO:0015450
Vvi2g791 310 ProSiteProfiles AIG1-type G domain profile. 35 259 IPR006703 GO:0005525
Vvi2g791 310 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 1 300 IPR045058 -
Vvi2g791 310 PANTHER TRANSLOCASE OF CHLOROPLAST 1 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g791 - - - vvi:100257906 609.372
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g791 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003669 1 0 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 8 2 46