Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g792 ATGTCTACAAAATCAGGTTGCGCAGTTTACATAGGTAATTTGGATGAGAGGGTAAGCGAGAGGGTTTTGTATGATATTCTGATTCAGGTAGGGAGGGTGGTGGACTTATACATCCCTCGTGACAAGGAAACTGAACGGCCAAAAGGTTATGCCTTCGCAGAATATGAGACAGAGGAAATTGCAGAATATGCTGTCAAGCTTTTCTCTGGCCTTGTGACATTGTACAACCGAACCCTGAAATTTGCGATTTCTGGGCAAGATAAGCCCTCACCAGCAGCAATCACCCCAAGACACCATGTACCATATAACAATATGGAAAGTTCTCAACACTCCATGGGGTTGAAAACGCCTTGCAGATTATCGGCTCACCCAGTAAATAATGCACAAGCATCCTCTGATGTGTTACACCAACCTAATAGGAATAGTTCACAACATGATGGCAACAATTATGACTACAGTCGAAGAGTTTTTGGTGCAACATTGGATAACATTAGCCGCTCTAGGTCAAGATACTATGATTCCAGTAGTCCAGTCACATATCCCTCTTACTAA 552 42.93 MSTKSGCAVYIGNLDERVSERVLYDILIQVGRVVDLYIPRDKETERPKGYAFAEYETEEIAEYAVKLFSGLVTLYNRTLKFAISGQDKPSPAAITPRHHVPYNNMESSQHSMGLKTPCRLSAHPVNNAQASSDVLHQPNRNSSQHDGNNYDYSRRVFGATLDNISRSRSRYYDSSSPVTYPSY* 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13051403 13055977 - Vvi2g792 Vvi2g792 783491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g792 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 80 IPR000504 GO:0003723
Vvi2g792 183 MobiDBLite consensus disorder prediction 127 150 - -
Vvi2g792 183 MobiDBLite consensus disorder prediction 127 151 - -
Vvi2g792 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Vvi2g792 183 Gene3D - 1 90 IPR012677 -
Vvi2g792 183 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 1 183 - -
Vvi2g792 183 SUPERFAMILY RNA-binding domain, RBD 4 82 IPR035979 GO:0003676
Vvi2g792 183 PANTHER OS01G0876500 PROTEIN 1 183 - -
Vvi2g792 183 SMART rrm1_1 8 82 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g792 K12831 SF3B4, SAP49; splicing factor 3B subunit 4 - vvi:100252755 362.459
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g792 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .