Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g793 ATGAATAATCAGTTCCAATTTGCTTGCAACAATAGATTCTTCTGTGGTGGAAGACTTATATTTGGTCTAGATGCAAGTATATATTATGATATACCTCCCACAAAAGATGTCATGATCAATGGGATGGTAATCAAGGTCAAATATTGCCAAACACGCATGCTATATTGCCCACCAAAATGTTCTCATTGCTTTATATGTAATAACTGTGTTGATCGTTTTAACCACCATTGCCCATGGGTTTGGCAAGTATTGGAAGAGACTGTCCTGCATAGCGAACCAGTTGCCCTACAAATCCCAACCAACCGCGAAATCAAAGCTGAGAAGAAGAAGAAGAAGAAGCATAAACAGTCCAAAATCGCTTCTAATGAAGTGGTAGAAATTGGGAGGAAGAAGAAGAACGAAGACTACATAATCGAAGAAGAAACAGAGGCTAACCGAAAGAGAAAGCTCGAAGAAACGCCAACTGTAACAGAGGCGAAGAAGAAGAAGAAGGAGAAGGAGAAGAAGGAGAAGAAGGAGAAAGAGGGAGAAGAAGAAGGCTTGAAGGATGAAGATGATAAGGAGAGCAGAGGGGCGTGCGTGGCGGTGACTGGAAAGGACGCGAAGGAATCGAAGTATGCGGCTTTCAAATCATTTGCCGAGTCGAAGCTGCCGGATGATGTGCTCGAGTGTTGCCGCAATTTCAGCCAGCCCTCACCGATTCAGTCCCATGCCTGGCCGTTCTTGTTGGACCACCGGGATTTTATCGGGATTGCTGCTACTGGGTCTGGTAAGACATTGGCATTTGGAGTTCCAGCAATGATGCATGTTTTGAGTAAGCGGAAGAGTAAAACATCCAAGGGAGTGAATCCCCTTTGCCTTGTCTTGTCACCGACGAGGGAGCTAGCTCAGCAAATTTCAGATGTTCTGTGCGAGGCTGGAAAACATTGTGGTGTGAAGTCAGTTTGCTTGTATGGAGGAACTTCTAAAGGACCTCAAATAAGTTCCCTGAAGTCTGGTGTTGACATTGTCATAGGTACTCCTGGACGTTTGAAGGATCTAATTGAAATGGGTGTGTGTTGCCTTACAGAGGTATCTTTTGTGGTGTTAGATGAAGCAGATCGTATGCTGGACATGGGATTTGAACCAGAAGTTCGCTCTATATTAAGCCAGACATGTCCTGCTCGCCAAATGGTAATGTTTAGTGCAACATGGCCTCTACCTGTTCATCAATTAGCTCAAGAATTTATGGATCCCAACCCAGTTAAGGTTGTAATAGGTTCAGAGGATTTAGCTGCCAACCATGATGTTATGCAAATAGTGGAGGTCTTGGATGATCGATCACGTGATGAACGTCTGCTCACTTTGTTAGGGAAATACCACAAGTCCCAAAGGAACAGAGTGTTAGTTTTTGTTTTGTACAAGAAAGAAGCTGCTCGTGTTGAAAATATGCTACAAAGAAGGGGTTGGAATGTTGTTTCTATACATGGTGATAAAGCGCAACAAGCACGTACAGCGGCATTATCATTATTCAAGAAGGGAAGCTGTCCTTTGATGATAGCTACAGATGTGGCTGCACGAGGATTGGATATTCCAGATGTGGAAGTAGTGATCAACTACAGTTTTCCTCTCACTACAGAGGATTATGTTCACAGAATTGGAAGAACTGGACGAGCTGGTAAGAAGGGTGTTGCACACACATTCTTCATGCAGGAAAACAAGGGACTTGCTGGGGAGTTGGTGAATGTTCTCAAAGAAGCAGGGCAGATTGTCCCTGCTGACCTTTTAAAATTTGGCACACATGTAAAGAAAAAGGAGTCCAAGCTATATGGGGCTCACTTCAGAGAAATTGCTGCTGATGCTCCAAAGTCCAAAAAGATCACTTTTGACGACTCTGATGAAGATTGA 1887 43.67 MNNQFQFACNNRFFCGGRLIFGLDASIYYDIPPTKDVMINGMVIKVKYCQTRMLYCPPKCSHCFICNNCVDRFNHHCPWVWQVLEETVLHSEPVALQIPTNREIKAEKKKKKKHKQSKIASNEVVEIGRKKKNEDYIIEEETEANRKRKLEETPTVTEAKKKKKEKEKKEKKEKEGEEEGLKDEDDKESRGACVAVTGKDAKESKYAAFKSFAESKLPDDVLECCRNFSQPSPIQSHAWPFLLDHRDFIGIAATGSGKTLAFGVPAMMHVLSKRKSKTSKGVNPLCLVLSPTRELAQQISDVLCEAGKHCGVKSVCLYGGTSKGPQISSLKSGVDIVIGTPGRLKDLIEMGVCCLTEVSFVVLDEADRMLDMGFEPEVRSILSQTCPARQMVMFSATWPLPVHQLAQEFMDPNPVKVVIGSEDLAANHDVMQIVEVLDDRSRDERLLTLLGKYHKSQRNRVLVFVLYKKEAARVENMLQRRGWNVVSIHGDKAQQARTAALSLFKKGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFMQENKGLAGELVNVLKEAGQIVPADLLKFGTHVKKKESKLYGAHFREIAADAPKSKKITFDDSDED* 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13058117 13081615 - Vvi2g793 Vvi2g793 783492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g793 628 Coils Coil 157 184 - -
Vvi2g793 628 Gene3D - 151 419 IPR027417 -
Vvi2g793 628 SMART helicmild6 472 553 IPR001650 -
Vvi2g793 628 Pfam DEAD/DEAH box helicase 233 402 IPR011545 GO:0003676|GO:0005524
Vvi2g793 628 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 210 236 IPR014014 GO:0003724
Vvi2g793 628 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 429 592 IPR001650 -
Vvi2g793 628 PANTHER BNAA08G07020D PROTEIN 104 614 - -
Vvi2g793 628 MobiDBLite consensus disorder prediction 147 190 - -
Vvi2g793 628 Gene3D - 420 595 IPR027417 -
Vvi2g793 628 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 566 IPR027417 -
Vvi2g793 628 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 362 370 IPR000629 -
Vvi2g793 628 CDD SF2_C_DEAD 430 562 - -
Vvi2g793 628 ProSiteProfiles DHHC domain profile. 47 80 - -
Vvi2g793 628 CDD DEADc 226 417 - -
Vvi2g793 628 Pfam Helicase conserved C-terminal domain 444 553 IPR001650 -
Vvi2g793 628 SMART ultradead3 227 433 IPR014001 -
Vvi2g793 628 Pfam DHHC palmitoyltransferase 47 81 IPR001594 GO:0016409
Vvi2g793 628 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 104 614 - -
Vvi2g793 628 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 239 416 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g793 K14811 DBP3; ATP-dependent RNA helicase DBP3 [EC:3.6.4.13] - vvi:100247646 1021.92
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g793 . . . . . . . Bma14g00074 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008343 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 3 1 1 35