Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g8 ATGTCTTGTCTGTGTTTTTCTTACAAATTAACTTTGATGCAGCTTCATGGAACTCAATATTCTGTATACATTGATTTGCTCCGTCTCTTTGCTCATGGTACATGGAGGGATTACAAGAGTAATGCTGGCTTTCTTCCAGAGCTGGTTCCAGATCAAGTTCTCAAGCTAAAGCAACTTAGTATCCTTACTCTTGCTGAGAAGAACAAAGTTCTCTCCTACTATCAACTGATGCAGGAACTTGATATTTCTAATGTACGTGAACTTGAAGATTTTCTTATCAATGAGTGCATCAATGCGGGCATTGTTAGAGGAAAGTTGAATCAGTTGCAAAAATGCTTTGAGGTGCAATTTGCAGCAGGAAGAGATCTGAGACCTGGAACACTTGTGAGTCTGATACAGACTCTTACAAATTGGTTGTCCACTTCAGACAAAATGCTGTTGACAATCAAAGAGATGATTGATCAGGCAGATAGGATGAAAGAGTTGGACATGGAACATCAAAAGGAAGTTGAAGAAAAGATAGAATTAGCGAAGAAATTCCTCCAGAACAAGCCTAGTATCAAGTTGGGGCCATTGGAGGACATTGACATGCTCTATATGGATGAAGTAATGAGCTCCAGGGAACTTGGAACCCACTCCAAGAGGAAGCGAACATCAATATAG 663 39.97 MSCLCFSYKLTLMQLHGTQYSVYIDLLRLFAHGTWRDYKSNAGFLPELVPDQVLKLKQLSILTLAEKNKVLSYYQLMQELDISNVRELEDFLINECINAGIVRGKLNQLQKCFEVQFAAGRDLRPGTLVSLIQTLTNWLSTSDKMLLTIKEMIDQADRMKELDMEHQKEVEEKIELAKKFLQNKPSIKLGPLEDIDMLYMDEVMSSRELGTHSKRKRTSI* 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 143750 176185 + Vvi2g8 Vvi2g8 782707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g8 220 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 47 138 - -
Vvi2g8 220 SMART PINT_4 47 138 IPR000717 -
Vvi2g8 220 Pfam COP9 signalosome complex subunit 7a helix I domain 130 174 IPR041481 GO:0008180|GO:0010387
Vvi2g8 220 ProSiteProfiles PCI domain profile. 1 120 IPR000717 -
Vvi2g8 220 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 7/DENDRITIC CELL PROTEIN GA17 11 208 IPR045237 -
Vvi2g8 220 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 7 11 208 - -
Vvi2g8 220 Pfam PCI domain 43 115 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g8 K12180 COPS7, CSN7; COP9 signalosome complex subunit 7 - vvi:100241435 400.208
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g8 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .