Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g803 ATGGTGCGGTGCGGACGGAGGAAGATCGGCAGATCCTACATCCATATGCGGTATTTCGTGTTGGAGTCGCGTCTGCTTGCTTACTATAAGAGAAAGCCTCAGCATAATGTGGTTCCGATCAAGACGCTTCTAATTGATGGGAATTGTAGGGTGGAAGACAGAGGGTTGAAGACTCACCATGGATATATGGTTTATGTTTTGTCTATTTACAACAAGAAGGAGAAGTACCATCGAATCACGATGGCAGCATTCAATATCCAGGAGGCATTACTCTGGAAAGAAAAAATTGAGTCTGTAATTGATCAGCATCAGGACTTACAAGTTGCTAATGGAAATAAATATATTTCATTTGAATATAAATCTGGGATGGATAATGGAAGGGCTGCTTCCTCATCAGACCATGAAAGTCAGTTTAGTGCACAGGATGATGAAGAAGATACTCATCGTGATTTGGTTCGGAGAAAAACAATTGGAAATGGTATTCCTGACTCAGTGCTTGACTGGACTCGAGAAATAGATTCAGAATTGTCAAACCAGAATATCAACAATCAAGCCTTTTCCAGAAAGCATTGGCGTCTTCTCCAGTGCCAAAATGGACTTCGAATTTTTGAAGAGCTTCTTGAAGTTGATTACCTTCCAAGGAGCTGTAGTAGAGCAATGAAAGCTGTAGGGGTTGTGGAGGCAACCTGTGAAGAAATATTTGAGCTTGTAATGAGCATGGATGGAAAACGGTTTGAGTGGGATTGCAGTTTCCAAGATGGCAGCTTAGTGGAGGAGGTAGATGGACATACGGCTATTCTCTATCATAGGCTTCAGCTGGATTGGTTCCCTATGTTTGTGTGGCCTCGTGACCTTTGCTATGTGCGTTATTGGCGTCGAAATGATGATGGAAGCTATGTTGTGTTATTTCGTTCTAGGGAGCACGAGAACTGTGGTCCACAACCAGGATTTGTGCGTGCCCATCTTGAAAGTGGGGGATTCAACATTTCCCCTCTAAAACCTCGAAATGGGAGGCCCAGAACACAGGTTCAGCATCTTCTGCAAATTGATCTGAAAGGATGGGGTGCTGGTTATATTTCATCTTTTCAGCAACATTGTCTCCTTCAGGTGTTAAATAGTGTTGCTGGACTGCGTGAGTGGTTTTCCCAGACGGATGAAAGGAATGCTCAACCAAGAATTCCTGTTATGGTCAATATGGCCTCAGCTTCTGTTACTTCAAAGAAGAATCAGAAGCCACAGGAGTATTCTGATCAATCAAATGCTACAGGTAGGAACTCAATGATGATGGATGAAGACTCTGATGAAGATGAAGAATTTCAAGTACCTGAGAGAGAACAAGAGGCATACTCAATGAGTCTTCAGAATGAAGTCAAGGGAACAGCCATGGAAGAAGAACCCCAAGATAAAATTGATGTCTCATGTTTTTCGGGTAATCTACGACGTGATGACCGTGATAAGGGTCGTGACTGTTGGACGATATCTGATGGGAACAACTTCAGAGTTCGTTGCAAGCATTTTTTTTATGACAAAACGAAGATTCCTGCAGGGAAACATCTTATGGATCTTGTTGCTGTTGATTGGTTCAAAGACTCAAAACGGATCGACCATGTTGCTAGGCGACAAGGCTGTGCAGCACAAGTTGCATCAGAGAAAGGACTTTTCTCTATCATCATAAACCTCCAAGTACCCGGTTCAACACACTACAGTATGGTATTTTATTTTGTAAGTAAGGAATTAGTAACTGGATCCCTGTTGCAACGATTTGTTGATGGTGATGATGAATTCCGAAATAGCAGGCTGAAACTCATCCCATCAGTTCCCAAGGGTTCATGGATTGTGCGCCAGAGTGTTGGAAGCACCCCTTGTTTATTAGGAAAAGCAGTTGATTGCAATTATATCCGTGGTCCAAAGTACTTGGAGATTGATGTTGACATTGGTTCTTCAACTGTTGCCAATGGAGTTTTGGGCCTTGTATGTGGTGTAATTACAACATTGGTTGTTGACATGGCTTTCCTTGTACAGGCAAACACGGTGGATGAGTTGCCGGAGAGGTTGATTGGCGCCGTCCGGGTTTCCCATGTAGAGCTTTCATCAGCTATAGTCCCAAAATTGGACCCAGATACATGTGCTTGA 2133 43.04 MVRCGRRKIGRSYIHMRYFVLESRLLAYYKRKPQHNVVPIKTLLIDGNCRVEDRGLKTHHGYMVYVLSIYNKKEKYHRITMAAFNIQEALLWKEKIESVIDQHQDLQVANGNKYISFEYKSGMDNGRAASSSDHESQFSAQDDEEDTHRDLVRRKTIGNGIPDSVLDWTREIDSELSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCEEIFELVMSMDGKRFEWDCSFQDGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLLQIDLKGWGAGYISSFQQHCLLQVLNSVAGLREWFSQTDERNAQPRIPVMVNMASASVTSKKNQKPQEYSDQSNATGRNSMMMDEDSDEDEEFQVPEREQEAYSMSLQNEVKGTAMEEEPQDKIDVSCFSGNLRRDDRDKGRDCWTISDGNNFRVRCKHFFYDKTKIPAGKHLMDLVAVDWFKDSKRIDHVARRQGCAAQVASEKGLFSIIINLQVPGSTHYSMVFYFVSKELVTGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVCGVITTLVVDMAFLVQANTVDELPERLIGAVRVSHVELSSAIVPKLDPDTCA* 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13478752 13525358 + Vvi2g803 Vvi2g803 783502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g803 710 Gene3D - 191 393 IPR023393 -
Vvi2g803 710 SMART PH_update 1 103 IPR001849 -
Vvi2g803 710 MobiDBLite consensus disorder prediction 403 427 - -
Vvi2g803 710 CDD PH 15 96 - -
Vvi2g803 710 MobiDBLite consensus disorder prediction 403 435 - -
Vvi2g803 710 ProSiteProfiles PH domain profile. 1 101 IPR001849 -
Vvi2g803 710 SUPERFAMILY PH domain-like 12 103 - -
Vvi2g803 710 MobiDBLite consensus disorder prediction 126 149 - -
Vvi2g803 710 CDD START 183 354 - -
Vvi2g803 710 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 491 694 IPR009769 -
Vvi2g803 710 PANTHER PROTEIN ENHANCED DISEASE RESISTANCE 2-LIKE 1 706 - -
Vvi2g803 710 ProSiteProfiles START domain profile. 191 353 IPR002913 GO:0008289
Vvi2g803 710 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 1 706 IPR045096 -
Vvi2g803 710 Gene3D - 2 110 IPR011993 -
Vvi2g803 710 Pfam START domain 217 356 IPR002913 GO:0008289
Vvi2g803 710 SUPERFAMILY Bet v1-like 174 367 - -
Vvi2g803 710 SMART START_1 171 383 IPR002913 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g803 - - - vvi:100246589 1445.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g803 . . . . . . . . Cmo06g00616 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01143 . . Cme06g02419 . . . . . . . . . . . Cma06g00610 . Car06g00543 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006393 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 5 38