Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g805 ATGGTGGCGTCGAATGTGGTGCACGAGGGATGGATGGTGCGGTACGGACTGAGGAAGATCGGCACATCCTACATCCATATGCGGTATTTCGTGTTGGAGTCGCGTCTGCTTGCTTACTACAAGAGAAAGCCTGTGCAAGATGCGGTTCCGATCAAGACGCTTCTAATTGGTGGGAACTGTAGGGTGGAAGACAGAGGGTTGAAGACTCACCGTGGACATATGGTTTATGTTTTGTCTATTTACAACAAGAAAGAGAAGAACCATCAAATCATGATGGCAGCATTCAATATCCAGGAGGCATTAATCTGGAAAGAAAAAATTGAGGCTGTAATTGATCAGCATCAGGACTCACAAGTTGCAAATGGAAATAAATATATTTCATTTGAATATAAATCTGGGATGGATAATGGAAGGGCTGCTTCCTCATCTGACCATGAAAGTCAGTTTAGTGCAGAGGATGATGAAGAAGATACTCATCGTGCTTTGGTTCGGAGAAAAACAATTGGAAATGATTTTCCTGACTCAGTGTTTGACTGGACTCGAGAAATGGATTCAGAATTGTTAAACCAGGATATCAACAATCAAGCCTTTTCCTCTGATCAAAAAAAAGAAAAAAACAATCAAGCCTTCCCCAAAAAGCATTGGCGTCTTCTCCAATGCCAAAATGGACTTCGAATTTTTGAAGAGCTTCTTGAAGTTGATTACCTTCCAAGGAGCTGTAGTAGAGCAATGAAAGCTGTAGGGGTTGTGAAGGCAACCTGTGAAGAAATATTTGAGCTTGTAATGAGCATGGATGGAACACGGTTTGAGTGGGATTGCAGTTTCCAATATGGCAGCTTAGTGGAGGAGGTAGATGGACATACAGCTATTCTCTATCATAGGCTTCAGCTGGGCTGGTTCCCTATGTTTGTGTGGCCTCGTGACCTTTGCTATGTGCGTTATTGGTGTCGAAATGATGATGGAAGTTATGTTGTGTTATTTCGTTCTAGGGAGCACGAGAACTGTGGTCCGCAACCAGGATGTGTGCGTGCCCATCTTGAAAGTGGGGGATTCATCATTTCCCCTCTAAAACCTCGAAATGGGAGGCCCAGAACACAGGTTCAGCATCTTATGCAAATTGATCTGAAAGGATGGGGCACTGGTTATATTTCATCATTTCAGCAACATTGTGTCCTTCAGATGTTAAATAGTGTTGCTGGACTGCGTGAGTGGTTTTCTCAGACGGATAAAAGGAATGCTCTGCCAAGAATTCCTGTTATGGTCAATATGGCCTCAACTTCTTTTACTTCAGAGAAGAATCAGAAGCCACAGGAGTCTTCTGATCAATTGAATGCTACAAGTAGGAACTCAATGATGATGGATGAATACTCTGATGAAGATGAAGAATTTCAAGCACCCGAGACAGAACAAGAGGCATACTCAATGAGTCTTCCGAATGAAGTCAAAGGAACAGCCATGGAAGAAGAACCCCAAGATAAAATTGATGTCTCATGTTTTTCGGGCAATCTACGACGTGATGACCGTGATAAGGGTCGTGACTGCTGGACGATATCTGATGGGAACAACTTCAGAGTTCGTAGCAAGCATTTTTGTTATGACAAAACGAAGATTCCTGCAGGGAAACATCTTATGGATCTTGTTGCTGTTGATTGGTTCAAAGACTCAAAACGGATCGACCATGTTGCTAGGCGACAAGGCTGTGCAGCACAAGTTGCATCAGAGAAAGGACTTTTCTCTATTGTCATAAACCTGCAAGTACCCGGTTCAACACACTACAGTATGATATTTTATTTTGTAACTAAGGAATTGCTAACTGGATCCCTGTTGCAACGATTTGTTGATGGTTATGATGAGTTCCGAAATAGCAGGCTGAAGCTCATCCCATCAGTTCCCAAGGCTCCATGGATGGTGCGCCGGATTGTTGGAAGCACCCCTCATTTCCTAGGAAAAGTAGTTGATTGCAATTATATCCGTGGTCCAAAGTACTTGGAGATTGATGTTGATTTTGGTTCTTCAACTGTTGTTGATGGAGCTTTGGCCTTTGTAAATGGTGCAATTCCTAACTTGGTTGTTGACATGGCTTTCCTTGTACAGGGAAACACTGAGGATGAGTTGCCGGAGAGGTTGATCGGCGCAGTCCGGGTTTCCCGTGTAGATTTTTCATCAGCTATAGTCCCAAAATTGGACCCATATACATATGCTTGA 2205 43.13 MVASNVVHEGWMVRYGLRKIGTSYIHMRYFVLESRLLAYYKRKPVQDAVPIKTLLIGGNCRVEDRGLKTHRGHMVYVLSIYNKKEKNHQIMMAAFNIQEALIWKEKIEAVIDQHQDSQVANGNKYISFEYKSGMDNGRAASSSDHESQFSAEDDEEDTHRALVRRKTIGNDFPDSVFDWTREMDSELLNQDINNQAFSSDQKKEKNNQAFPKKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVKATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLGWFPMFVWPRDLCYVRYWCRNDDGSYVVLFRSREHENCGPQPGCVRAHLESGGFIISPLKPRNGRPRTQVQHLMQIDLKGWGTGYISSFQQHCVLQMLNSVAGLREWFSQTDKRNALPRIPVMVNMASTSFTSEKNQKPQESSDQLNATSRNSMMMDEYSDEDEEFQAPETEQEAYSMSLPNEVKGTAMEEEPQDKIDVSCFSGNLRRDDRDKGRDCWTISDGNNFRVRSKHFCYDKTKIPAGKHLMDLVAVDWFKDSKRIDHVARRQGCAAQVASEKGLFSIVINLQVPGSTHYSMIFYFVTKELLTGSLLQRFVDGYDEFRNSRLKLIPSVPKAPWMVRRIVGSTPHFLGKVVDCNYIRGPKYLEIDVDFGSSTVVDGALAFVNGAIPNLVVDMAFLVQGNTEDELPERLIGAVRVSRVDFSSAIVPKLDPYTYA* 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13595183 13673525 + Vvi2g805 Vvi2g805 783504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g805 734 SMART START_1 194 407 IPR002913 GO:0008289
Vvi2g805 734 SMART PH_update 6 114 IPR001849 -
Vvi2g805 734 CDD PH 8 107 - -
Vvi2g805 734 Pfam START domain 241 380 IPR002913 GO:0008289
Vvi2g805 734 ProSiteProfiles PH domain profile. 5 112 IPR001849 -
Vvi2g805 734 PANTHER PROTEIN ENHANCED DISEASE RESISTANCE 2-LIKE 5 729 - -
Vvi2g805 734 SUPERFAMILY PH domain-like 4 117 - -
Vvi2g805 734 SUPERFAMILY Bet v1-like 207 395 - -
Vvi2g805 734 MobiDBLite consensus disorder prediction 136 158 - -
Vvi2g805 734 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 5 729 IPR045096 -
Vvi2g805 734 MobiDBLite consensus disorder prediction 427 448 - -
Vvi2g805 734 Gene3D - 215 414 IPR023393 -
Vvi2g805 734 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 515 719 IPR009769 -
Vvi2g805 734 Gene3D - 2 122 IPR011993 -
Vvi2g805 734 CDD START 200 378 - -
Vvi2g805 734 ProSiteProfiles START domain profile. 215 377 IPR002913 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g805 - - - vvi:100241468 1501.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g805 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006393 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 5 38