Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g807 ATGCTTGTTAAACATGAAGAAAATGCCATTCTTAGGGGTATTTGCCCACAAGTTTTTGGACTCTTCATTGTGAAACTTGCAATTGCATTAACACTTATTGGAGGTGTGCAACATGTTGATGCTTCTAGGACTAAGGTTCGAGGAAAATCTCATTTGCTTCTAGTTGGTGATCCTGTGGACTTGTTGGGGAGCGTGTGTTTTTTGAATTTCATTGCTAGGTTGGAAATGCTTGAAGTCTCCATTTTTTTTCTTTTCCATCTTTTTTTTAGGGTACTAACCACTTTTAAGGAATTTTTAGGGGAATGGATGTTGGAAGCTAGGGCTCTTGTTTTGGTAGATGGTGGGCTTTGTTGTATAGACGAATTTGATAGTATGAGGGAACATGATAGGGCAACCATACATGAAGCAATGGAAATGATCTTGCAAGATGACAGATCAATGGATTTTCCTGAGAATCTAGTTCTAGTTCAGGGCCATGTAATTCATGGAAGTTGGTCCCTAATGAGAAGCGTTCTCCTCATTTCATCACCATTTATTTCTCTCTTGTCTGATCAAAGCTTTGGTGAAGACATCAACCACTTGGAGATCAGAAGAGATGTGAGGAAGAGATATCACCCGACTTTCCAAGGTGTCTCAAATAGAATGACAATCAACCTCAATGTGCTTGGTATGTTCATGAAAAACGGGATTGGTGGCAATCTGAATAGCACTAGTGTTATCAGCATGAAGAGGTGTACACATAGTTTGAGGAAACACAAGCTCCTCAAGAAGACCGCTAGCCTTGTGACGTCTCTTTGTACCAGGACAATTGTCTTTGGTGCAACAAATCCTAAAGGACATTATGATCCTGGTCAATCTCTCTGTGTTAATACAACACTAACTAAAGAATGGGATGCAGTTGTCTCTTCTCACATTCTTTCTCAAATATCTGGCCACTTCCTTTACTTAGGAGGTAAAATCTTTTATAAGTGTTTCCAATTTGAATCTCTTCTCTTGTTTATTTCCCCAATTATGGTTAATGTGATGAACACTAATTCAAGTAATGCAGAACGAACAACTGTGCGCATGCTAGAAAGCTTGATACGGTTAGCCCAAGCACATGCAGGACTGATGTTCAGAAATGAGGTCACCAGACTAGATGCCATCACAGCCATTCTCTGCATTGAATCATCCATGACCACCTCAACCATTGTGGACAATGTCGAGAATGCCCTACACTCCAATTTCACTGAGAATCCTGATCAGGAATGTATCCTCACAATCTGTGTCCATAGTTAA 1278 40.06 MLVKHEENAILRGICPQVFGLFIVKLAIALTLIGGVQHVDASRTKVRGKSHLLLVGDPVDLLGSVCFLNFIARLEMLEVSIFFLFHLFFRVLTTFKEFLGEWMLEARALVLVDGGLCCIDEFDSMREHDRATIHEAMEMILQDDRSMDFPENLVLVQGHVIHGSWSLMRSVLLISSPFISLLSDQSFGEDINHLEIRRDVRKRYHPTFQGVSNRMTINLNVLGMFMKNGIGGNLNSTSVISMKRCTHSLRKHKLLKKTASLVTSLCTRTIVFGATNPKGHYDPGQSLCVNTTLTKEWDAVVSSHILSQISGHFLYLGGKIFYKCFQFESLLLFISPIMVNVMNTNSSNAERTTVRMLESLIRLAQAHAGLMFRNEVTRLDAITAILCIESSMTTSTIVDNVENALHSNFTENPDQECILTICVHS* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13681702 13716339 - Vvi2g807 Vvi2g807 783506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g807 425 Pfam MCM AAA-lid domain 345 391 IPR041562 -
Vvi2g807 425 PANTHER DNA HELICASE MCM9 6 138 - -
Vvi2g807 425 PANTHER DNA HELICASE MCM9 257 419 - -
Vvi2g807 425 Pfam MCM P-loop domain 8 138 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g807 425 Gene3D - 4 140 IPR027417 -
Vvi2g807 425 Gene3D - 334 397 IPR027417 -
Vvi2g807 425 PRINTS Mini-chromosome maintenance (MCM) protein family signature 47 62 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g807 425 PRINTS Mini-chromosome maintenance (MCM) protein family signature 107 121 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g807 425 ProSiteProfiles MCM family domain profile. 6 138 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g807 425 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 6 138 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi2g807 425 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 257 419 IPR031327 GO:0003677|GO:0005524|GO:0032508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g807 K10738 MCM9; DNA helicase MCM9 [EC:5.6.2.4] - qsu:111990150 177.563
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0070313 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1