Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g811 ATGGCCTCAACAGAAGTAGACGACCCCGAGTCGTTGAAAGCCTTGGCAGTCTTTCTGCTTCGCCACCACTCCAGTGACCTCCGCTCCATTATCCTCGCCCGCGATTCTCTCCTTCATTACCCTCTCCATATCCAATTTGCAGAACTTATGAATGATGATCCTCCACGCGCTCACCTTCTCTTCTCCCAACCTCTACAATACCTCCGACTATTCGACTCCGCAGCATTCCTGGCTCAGAGAGCCATATTGGAAGAATTTGGTTGGGTGAATGCTAGTGTAAAGGAATCTGTGCATGTTCGGATTAATATCTCCGGTTCTCCCCTTGAATTCCCTGAGACTTTTCCCAGCATTGGAAGAGTGAGAGTGAAGCATCATGGAATTCTTCTTACCCTGAAGGGGACAGTAATTCGATCTGGAGGGATCAAGATGATTGAAGGGGAGAGGAAATATGAGTGCCGGAAATGCAAGCACATCTTCAAAGTTTATCCTGAGCTGGAAACTAGAAATGCCATACTACTCCCATCATCTTGCCCCTCCCAGAAGTGTGCTGGAACAAACTTTCAGCTTGTAGAGGACAGTATAATACGCCATGATTATCAGGAAATTAAGATCCAAGAAAGCGTGCAGGTTTTGGGTGTTGGGGCTATTCCTCGTTCAATTCCTGTCATTCTGCAGGATGATCTTGTTGACATTGTTAAAGCAGGAGATGACATAATTGTTACTGGGATTTTGACTGCAAAATGGTCTTCAGATTTGAAAGATGTGCGCTGTGACCTTGATCCAGTATTAATTGCTAATCATGTGAGGAGAACTAATGAGCTTAGATCAGACATGGATATCCCTGATGAGGTCATTATGAAATTCAAGCAGTTCTGGTCAGACTTCAAAGATACCCCATTAAAAGGGAGAAATGCCATTCTTAGGGGTATTTGCCCACAAGTTTTTGGACTCTTCACTGTGAAACTTGCAGTTGCATTAACACTTATCGGAGGTGTGCAACATGTTGATGCTTCTGGGACTAAGGTTCGAGGAGAGTCTCATTTGCTTCTAGTTGGTGATCCTGGTACTGGAAAATCTCAGTTCTTGAAGTTTGCTGCCAAGTTGAGCAACAGATCTGTTATTACTACTGGGTTTGGAAGCACTAGTGCTGGATTGACTGTTACTGCAGTCAGGGATGGAGGGGAATGGATGTTGGAAGCTGGGGCACTTGTTTTGGCAGATGGTGGGCTTTGTTGTATAGACGAATTCAATAGTATGAGGGAACATGATAGGGCAACCATACATGAAGCAATGGAGCAACAGACTATAAGTATTGCCAAGGCTGGTCTTGTGACAACTCTTAATACCAGGACAATTGTCTTTGGTGCAACAAATCCTAAAGGACATTATGATCCTGGTCAATCTCTCTCTGTCAATACAACACTGTCTGGACCCTTATTGAGCAGATTTGATATAGTTCTTGTCCTCTTGGATACAAAGAACCCAGAATGGGATGCAGTTGTTTCTTCTCACATTCTTGCTGAGCCTGAAGAATCAGAGAATGGCAAGCGTGATGAAAATCTAGCCAATATCTGGCCGCTTCCCTTACTTAGGAGGTACATTCACTTTGTAAAAGGATACTTCAAACCGGTTCTGACAAAGGAAGCTGAGAAAGTAATTTCAAGTTATTATCAACTCCAAAGAAGATCAGCAACACATAATGCAGCAAGAACAACCGTGCGCATGCTAGAAAGCTTGATACGGTTAGCCCAAGCACATGCAAGACTGATGTTCAGAAATGAGGTCACCAGACTAGATGCCATCACAGCCATTCTCTGCATTGAATCATCCATGACCACCTCGGCCATTGTGGACAGTGTCGGGAATGCCCTGCACTCCAATTTCACTGAGAATCCTGATCAGGAATATGCCAAGCAAGAGAGGTTGATCCTGGAGAAGCTGAGTTCTATAGATGAATTTCCCGACATAATCAGCATACATGGATCAATAACCGGATGA 1998 44.19 MASTEVDDPESLKALAVFLLRHHSSDLRSIILARDSLLHYPLHIQFAELMNDDPPRAHLLFSQPLQYLRLFDSAAFLAQRAILEEFGWVNASVKESVHVRINISGSPLEFPETFPSIGRVRVKHHGILLTLKGTVIRSGGIKMIEGERKYECRKCKHIFKVYPELETRNAILLPSSCPSQKCAGTNFQLVEDSIIRHDYQEIKIQESVQVLGVGAIPRSIPVILQDDLVDIVKAGDDIIVTGILTAKWSSDLKDVRCDLDPVLIANHVRRTNELRSDMDIPDEVIMKFKQFWSDFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGFGSTSAGLTVTAVRDGGEWMLEAGALVLADGGLCCIDEFNSMREHDRATIHEAMEQQTISIAKAGLVTTLNTRTIVFGATNPKGHYDPGQSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEPEESENGKRDENLANIWPLPLLRRYIHFVKGYFKPVLTKEAEKVISSYYQLQRRSATHNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDSVGNALHSNFTENPDQEYAKQERLILEKLSSIDEFPDIISIHGSITG* 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13772326 13858248 - Vvi2g811 Vvi2g811 783510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g811 665 Pfam MCM OB domain 119 245 IPR033762 -
Vvi2g811 665 ProSiteProfiles MCM family domain profile. 302 505 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g811 665 PANTHER DNA HELICASE MCM9 36 649 - -
Vvi2g811 665 SMART mcm 113 612 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi2g811 665 CDD MCM9 305 610 - -
Vvi2g811 665 Gene3D - 120 246 IPR012340 -
Vvi2g811 665 Pfam MCM AAA-lid domain 529 610 IPR041562 -
Vvi2g811 665 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 36 649 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vvi2g811 665 SUPERFAMILY Nucleic acid-binding proteins 32 253 IPR012340 -
Vvi2g811 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 614 IPR027417 -
Vvi2g811 665 Gene3D - 277 616 IPR027417 -
Vvi2g811 665 Gene3D - 144 197 - -
Vvi2g811 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 343 358 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g811 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 401 415 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g811 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 442 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g811 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 452 464 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g811 665 PRINTS Mini-chromosome maintenance (MCM) protein family signature 479 487 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vvi2g811 665 SMART AAA_5 344 493 IPR003593 -
Vvi2g811 665 Pfam MCM P-loop domain 304 507 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g811 K10738 - vvi:100243188 1311.98