Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g818 ATGGAGAGAGGATACGAGAACGGAGTGGTAATGACGCGAGACCCGAGGCCGCGCTTGCGCTGGACGCCCGATCTCCACGACCGCTTTGTCGACGCTGTCACCAAGCTCGGCGGTCCACACAAAGCAACACCCAAGTCGGTGTTGAGGCTGATGGGCTTGAAGGGCTTGACACTGTACCATTTGAAGAGCCATTTACAGAAATATAGACTTGGACAGCAATCCCGGAAGCAAAGCATCACAGAGAACAGTGATTACAGGACTCATGCCTCAGGAACGAGTGCTAAATCATCAAGCAGAAACAACGAACAAGGAGGGATCCTAATTGCAGAGGCAGTAAGGTGTCAAGTTGAAGTACAAAAACAATTACTAGAGCAGATTGAGGTACAGAAGAAGTTACAAATGAGAATAGAGGCTCAAGGAAAATACTTGCAGGCAGTACTGGACAAAGCACAACAAAGCCTCTCAATAAATGTGAACTGCCCTGGTAGTCTAGAAGCCATGAGAGCCCAATTAACCAACTTTAATATGGCTCTGTCAAGTCTTACGGAGAACACAAATGAAGAAGACATGAAGGTAAACATAATAGAGAAGAGCATACCAAGTAATAGGGCCAATGGTTCTGTTTTCACAGCTTACCGAGAGGCAGAGGAATTAGTAAACAAGGATGTCAAGTTCAGGGAGGGAGAAGGTTTTAGACATTTTGATTTGAATACCAAGGGTAACTATGAATTTGCTGGTGCAAATGGAGCTGATTTTGAAGCCAAGATGATTGCATACAGAAGATGA 786 45.17 MERGYENGVVMTRDPRPRLRWTPDLHDRFVDAVTKLGGPHKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQSRKQSITENSDYRTHASGTSAKSSSRNNEQGGILIAEAVRCQVEVQKQLLEQIEVQKKLQMRIEAQGKYLQAVLDKAQQSLSINVNCPGSLEAMRAQLTNFNMALSSLTENTNEEDMKVNIIEKSIPSNRANGSVFTAYREAEELVNKDVKFREGEGFRHFDLNTKGNYEFAGANGADFEAKMIAYRR* 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14032864 14036930 - Vvi2g818 Vvi2g818 783517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g818 261 Pfam MYB-CC type transfactor, LHEQLE motif 108 152 IPR025756 -
Vvi2g818 261 Pfam Myb-like DNA-binding domain 19 69 IPR001005 -
Vvi2g818 261 MobiDBLite consensus disorder prediction 70 101 - -
Vvi2g818 261 Coils Coil 164 184 - -
Vvi2g818 261 Gene3D - 15 73 - -
Vvi2g818 261 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 249 IPR044848 GO:0003700
Vvi2g818 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Vvi2g818 261 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 6 249 - -
Vvi2g818 261 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 17 71 IPR006447 GO:0003677
Vvi2g818 261 SUPERFAMILY Homeodomain-like 16 73 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g818 - - - vvi:100253346 518.079
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g818 . . . . . . . . . . . . Car02g01405 . . . Cpe05g00146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo02g01694 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008955 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14614 PF00249 Myb_DNA-binding 8.00E-08 CL0123 Vvi TF