Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g820 ATGGCCACCAGGTTGTTATCAAGAACAACAACCAAAAGCCTGTGCAAAACTCTCCACCATCACTTCCAGCACTCTTCTTCATGTCTCGTTCAGCTCCTCAGAAACGCTCATGTCCTTGGTTCTAGCCCATTTGATTCTACTAAGTTTCTTTATAGAAACTCCAGGGGTATGGTTTGTGCCCCAAATTACGATATTAGCTCTCTCAATCTCGACAATAGGGTTCCTGCCACTGTAATCACTGGTTTTCTCGGCTCTGGAAAGACCACTCTCTTGAATCATATTTTAACTTCACAACATGGAAAGCGGATTGCTGTCATAGAGAACGAGTTTGGCGAGGTGGATATTGATGGTTCATTGGTTGCTAGTCATTCCTCAGTGGCTGAAGACATTGTCATGGTTAATAATGGGTGTCTATGCTGTACCGTACGAGGAGATCTAGTGAAAATGCTCTTGGAATTGGTTAAGAAAAAGCGAGACAAATTTGATCATATTGTTATAGAAACCACAGGCCTTGCTAAACCGGCTCCTGTTATTGAAACATTTTGTACTGATGAGTTAGTTTCACGTTATGTGAAACTTGATGGAGTTGTTACTTTGGTCGATGCTAAGCATGCCATGCAACATTTAGATGAAGTAAAACCCAGATTTGTGGTGAATGAAGCAGTGGAACAAGTTGCTTATGCAGACCGTATCATTTTAAATAAGATTGATTTGGTGACTGAGGCTGACTTGGAGAGATTGACCCAGAGAATTAAGCATATCAATGGGATGGCTCAGATAAAGTTAGCTAAATTTGGATGTGTTGACATGGACTTTGTTTTGGGAGTGGGAGGATATGATCTTGAGAGAATTGATTCCGAGGTTCAGGTAGATAGCTCCCATTGTGCAACCCATCAACATGAAACCGGGAAAGGACACCATAAAGGACATCATCACGATCATGTGCATGATTCTGCTGTCTCCAGTGTCAGTATAGTTTCTGAAGGAACCCTTGACCTTGATGAGGTAGATGATTGGCTGGAAAGGCTTCTTGAAGAAAAAGGGGAAGACTTGTACAGGATGAAGGGGGTCCTGTGTGTGAATGGTTCTGATGAACGTTATGTTTTTCAGGGGGTGCATTCTACATTAGATGGCTGCCCAGGCAAAACATGGGAACCTGATGAGAAAAGGGTGAGCAAACTCGTATTTATAGGAAGGAACTTGGATGAAACTGCTCTAAGAAAAGGTTTCAGAGGTTGTCTAGTGTGA 1248 42.31 MATRLLSRTTTKSLCKTLHHHFQHSSSCLVQLLRNAHVLGSSPFDSTKFLYRNSRGMVCAPNYDISSLNLDNRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDGSLVASHSSVAEDIVMVNNGCLCCTVRGDLVKMLLELVKKKRDKFDHIVIETTGLAKPAPVIETFCTDELVSRYVKLDGVVTLVDAKHAMQHLDEVKPRFVVNEAVEQVAYADRIILNKIDLVTEADLERLTQRIKHINGMAQIKLAKFGCVDMDFVLGVGGYDLERIDSEVQVDSSHCATHQHETGKGHHKGHHHDHVHDSAVSSVSIVSEGTLDLDEVDDWLERLLEEKGEDLYRMKGVLCVNGSDERYVFQGVHSTLDGCPGKTWEPDEKRVSKLVFIGRNLDETALRKGFRGCLV* 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14046627 14071572 - Vvi2g820 Vvi2g820 783519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g820 415 CDD CobW-like 75 277 - -
Vvi2g820 415 PANTHER OSJNBA0083N12.6 PROTEIN 48 415 - -
Vvi2g820 415 Gene3D - 300 414 IPR036627 -
Vvi2g820 415 Gene3D - 71 279 IPR027417 -
Vvi2g820 415 SMART CobW_C_3 320 414 IPR011629 -
Vvi2g820 415 PANTHER COBW-RELATED 48 415 - -
Vvi2g820 415 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 320 414 - -
Vvi2g820 415 MobiDBLite consensus disorder prediction 295 314 - -
Vvi2g820 415 Pfam CobW/HypB/UreG, nucleotide-binding domain 75 260 IPR003495 -
Vvi2g820 415 Pfam Cobalamin synthesis protein cobW C-terminal domain 320 414 IPR011629 -
Vvi2g820 415 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 288 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g820 - - - vvi:100265506 768.844
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g820 . . . Bda08g00649 Bpe05g00508 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00693 . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g02189 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002951 2 0 2 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 2 1 2 2 2 1 2 4 4 2 54